Nessus is not finding port 443 on a device on which I know it is open, 
but it does find 80..
Verified with nmap and that finds both 80 and 443 on that device.

Anybody any ideas to the why ?

This is the command I'm using:
 /opt/nessus/bin/nessus -c nessusrc  -T nbe -xq 127.0.0.1 1241 {userid} 
{password} {rangefile} {outputfile.nbe}

Below is the nessusrc file I'm using (all plugins are enabled, except 
for the DOS ones, so I've not included those lines).
.
In this nessusrc file I've tried these three options:

Ping the remote host[entry]:TCP ping destination port(s) : = built-in
Ping the remote host[entry]:TCP ping destination port(s) : = extended
Ping the remote host[entry]:TCP ping destination port(s) : = 
"21;22;23;25;53;69;79;80;110;111;113;123;135;137;138;139;143;161;256;259;264;265;389;443;445;497;500;515;548;900;953;981;993;1025;1028;1029;1080;1201;1241;1433;1454;1723;1900;1917;2809;2869;2998;3128;3389;4100;5000;5600;8000;8080;9001;9100;9495;18182;65553"

All give me the exact same results, no port 443.


# This file was automagically created by nessus
nessusd_user = tst
nessusd_host = 127.0.0.1
begin(PLUGIN_PREFS)
 Global variable settings[checkbox]:Enable CGI scanning = yes
 Global variable settings[radio]:Network type = Mixed (use RFC 1918)
 Global variable settings[checkbox]:Enable experimental scripts = no
 Global variable settings[checkbox]:Thorough tests (slow) = no
 Global variable settings[radio]:Report verbosity = Normal
 Global variable settings[radio]:Report paranoia = Normal
 Global variable settings[radio]:Log verbosity = Normal
 Global variable settings[entry]:Debug level = 0
 HTTP NIDS evasion[checkbox]:Use HTTP HEAD instead of GET = no
 HTTP NIDS evasion[radio]:URL encoding = none
 HTTP NIDS evasion[radio]:Absolute URI type = none
 HTTP NIDS evasion[radio]:Absolute URI host = none
 HTTP NIDS evasion[checkbox]:Double slashes = no
 HTTP NIDS evasion[radio]:Reverse traversal = none
 HTTP NIDS evasion[checkbox]:Self-reference directories = no
 HTTP NIDS evasion[checkbox]:Premature request ending = no
 HTTP NIDS evasion[checkbox]:CGI.pm semicolon separator = no
 HTTP NIDS evasion[checkbox]:Parameter hiding = no
 HTTP NIDS evasion[checkbox]:Dos/Windows syntax = no
 HTTP NIDS evasion[checkbox]:Null method = no
 HTTP NIDS evasion[checkbox]:TAB separator = no
 HTTP NIDS evasion[checkbox]:HTTP/0.9 requests = no
 HTTP NIDS evasion[checkbox]:Random case sensitivity (Nikto only) = no
 SNMP settings[entry]:Community name : = public
 SNMP settings[entry]:UDP port : = 161
 Ping the remote host[entry]:TCP ping destination port(s) : = extended
 Ping the remote host[checkbox]:Do a TCP ping = yes
 Ping the remote host[checkbox]:Do an ICMP ping = no
 Ping the remote host[entry]:Number of retries (ICMP) : = 6
 Ping the remote host[checkbox]:Do an applicative UDP ping (DNS,RPC...) = no
 Ping the remote host[checkbox]:Make the dead hosts appear in the report 
= yes
 Ping the remote host[checkbox]:Log live hosts in the report = yes
 Login configurations[checkbox]:Never send SMB credentials in clear text 
= yes
 Login configurations[checkbox]:Only use NTLMv2 = no
 Kerberos configuration[entry]:Kerberos KDC Port : = 88
 Kerberos configuration[radio]:Kerberos KDC Transport : = udp
 SSH settings[entry]:SSH user name : = root
 Services[entry]:Number of connections done in parallel : = 6
 Services[entry]:Network connection timeout : = 5
 Services[entry]:Network read/write timeout : = 5
 Services[entry]:Wrapped service read timeout : = 2
 Services[radio]:Test SSL based services = Known SSL ports
 Unknown CGIs arguments torture[checkbox]:Send POST requests = no
 SMB use host SID to enumerate local users[entry]:Start UID : = 1000
 SMB use host SID to enumerate local users[entry]:End UID : = 1200
 Web mirroring[entry]:Number of pages to mirror : = 200
 Web mirroring[entry]:Start page : = /
 SMB use domain SID to enumerate users[entry]:Start UID : = 1000
 SMB use domain SID to enumerate users[entry]:End UID : = 1200
 Login configurations[entry]:FTP account : = anonymous
 Login configurations[entry]:FTP writeable directory : = /incoming
 SMB Scope[checkbox]:Request information about the domain = yes
Misc information on News server[entry]:Test group name regex : = 
f[a-z]\.tests?
 Misc information on News server[entry]:Max crosspost : = 7
 Misc information on News server[checkbox]:Local distribution = yes
 Misc information on News server[checkbox]:No archive = no
 HTTP login page[entry]:Login page : = /
 HTTP login page[entry]:Login form fields : = user=%USER%&pass=%PASS%
 SMTP settings[entry]:Third party domain : = example.com
 SMTP settings[entry]:From address : = [EMAIL PROTECTED]
 SMTP settings[entry]:To address : = [EMAIL PROTECTED]
end(PLUGIN_PREFS)

begin(PLUGIN_SET)
...................removed (all yes except for the DOS ones)

end(PLUGIN_SET)

begin(PLUGINS_PREFS)
 Ping the remote host[entry]:TCP ping destination port(s) : = built-in
 SSH settings[password]:Passphrase for SSH key : =
 SSH settings[file]:SSH private key to use : =
 SSH settings[file]:SSH public key to use : =
 SSH settings[password]:SSH password (unsafe!) : =
 Nmap (NASL wrapper)[file]:File containing grepable results : =
 Nmap (NASL wrapper)[entry]:Minimum wait between probes (ms) =
 Nmap (NASL wrapper)[entry]:Ports scanned in parallel (min) =
 Nmap (NASL wrapper)[entry]:Ports scanned in parallel (max) =
 Nmap (NASL wrapper)[entry]:Initial RTT timeout (ms) : =
 Nmap (NASL wrapper)[entry]:Max RTT Timeout (ms) : =
 Nmap (NASL wrapper)[entry]:Min RTT Timeout (ms) : =
 Nmap (NASL wrapper)[entry]:Host Timeout (ms) : =
 Nmap (NASL wrapper)[entry]:Source port : =
 Login configurations[entry]:Additional SMB domain (optional) (3) : =
 Login configurations[password]:Additional SMB password (3) : =
 Login configurations[entry]:Additional SMB account (3) : =
 Login configurations[entry]:Additional SMB domain (optional) (2) : =
 Login configurations[password]:Additional SMB password (2) : =
 Login configurations[entry]:Additional SMB account (2) : =
 Login configurations[entry]:Additional SMB domain (optional) (1) : =
 Login configurations[password]:Additional SMB password (1) : =
 Login configurations[entry]:Additional SMB account (1) : =
 Login configurations[entry]:SMB domain (optional) : =
 Login configurations[password]:SMB password : =
 Login configurations[entry]:SMB account : =
 Login configurations[password]:IMAP password (sent in clear) : =
 Login configurations[entry]:IMAP account : =
 Login configurations[password]:POP3 password (sent in clear) : =
 Login configurations[entry]:POP3 account : =
 Login configurations[password]:POP2 password (sent in clear) : =
 Login configurations[entry]:POP2 account : =
 Login configurations[password]:NNTP password (sent in clear) : =
 Login configurations[entry]:NNTP account : =
 Login configurations[password]:HTTP password (sent in clear) : =
 Login configurations[entry]:HTTP account : =
 Cleartext protocols settings[password]:Password (unsafe!) : =
 Cleartext protocols settings[entry]:User name : =
 Windows File Contents Compliance Checks[file]:Policy file #5 : =
 Windows File Contents Compliance Checks[file]:Policy file #4 : =
 Windows File Contents Compliance Checks[file]:Policy file #3 : =
 Windows File Contents Compliance Checks[file]:Policy file #2 : =
 Windows File Contents Compliance Checks[file]:Policy file #1 : =
 Oracle settings[entry]:Oracle SID : =
 Kerberos configuration[entry]:Kerberos Realm (SSH only) : =
 Kerberos configuration[entry]:Kerberos Key Distribution Center (KDC) : =
 HTTP login page[entry]:Login form : =
 Services[file]:CA file : =
 Services[password]:PEM password : =
 Services[file]:SSL private key : =
 Services[file]:SSL certificate : =
 Web mirroring[entry]:Start page : = /
 Web mirroring[entry]:Number of pages to mirror : = 200
 SSH settings[entry]:SSH user name : = root
 SMTP settings[entry]:To address : = [EMAIL PROTECTED]
 SMTP settings[entry]:From address : = [EMAIL PROTECTED]
 SMTP settings[entry]:Third party domain : = example.com
 Global variable settings[entry]:HTTP User-Agent = Mozilla/4.0 
(compatible; MSIE 6.0; Windows NT 5.0)
 Global variable settings[entry]:Debug level = 0
 Global variable settings[radio]:Log verbosity = Normal;Quiet;Verbose;Debug
 Global variable settings[radio]:Report paranoia = Normal;Avoid false 
alarms;Paranoid (more false alarms)
 Global variable settings[radio]:Report verbosity = Normal;Quiet;Verbose
 Global variable settings[checkbox]:Thorough tests (slow) = no
 Global variable settings[checkbox]:Enable experimental scripts = no
 Global variable settings[radio]:Network type = Mixed (use RFC 
1918);Private LAN; Public WAN (Internet)
 Global variable settings[checkbox]:Enable CGI scanning = yes
 Global variable settings[checkbox]:Do not log in with user accounts not 
specified in the policy = no
 Nmap (NASL wrapper)[checkbox]:Run dangerous port scans even if safe 
checks are set = no
 Nmap (NASL wrapper)[checkbox]:Do not scan targets not in the file = no
 Nmap (NASL wrapper)[radio]:Timing policy : = Auto (nessus 
specific!);Normal;Insane;Aggressive;Polite;Sneaky;Paranoid;Custom
 Nmap (NASL wrapper)[checkbox]:Do not randomize the  order  in  which 
ports are scanned = no
 Nmap (NASL wrapper)[checkbox]:Get Identd info = no
 Nmap (NASL wrapper)[checkbox]:Fragment IP packets (bypasses firewalls) = no
 Nmap (NASL wrapper)[checkbox]:Use hidden option to identify the remote 
OS = no
 Nmap (NASL wrapper)[checkbox]:Identify the remote OS = no
 Nmap (NASL wrapper)[checkbox]:RPC port scan = no
 Nmap (NASL wrapper)[checkbox]:Service scan = no
 Nmap (NASL wrapper)[checkbox]:UDP port scan = no
 Nmap (NASL wrapper)[radio]:TCP scanning technique : = connect();SYN 
scan;FIN scan;Xmas Tree scan;Null scan
 Login configurations[checkbox]:Only use NTLMv2 = no
 Login configurations[checkbox]:Never send SMB credentials in clear text 
= yes
 Login configurations[radio]:SMB password type : = Password;LM Hash;NTLM 
Hash
 Login configurations[entry]:FTP writeable directory : = /incoming
 Login configurations[password]:FTP password (sent in clear) : = 
[EMAIL PROTECTED]
 Login configurations[entry]:FTP account : = anonymous
 SMB use domain SID to enumerate users[entry]:End UID : = 1200
 SMB use domain SID to enumerate users[entry]:Start UID : = 1000
 SMB Scope[checkbox]:Request information about the domain = yes
 SNMP settings[entry]:UDP port : = 161
 SNMP settings[entry]:Community name : = public
 SMB use host SID to enumerate local users[entry]:End UID : = 1200
 SMB use host SID to enumerate local users[entry]:Start UID : = 1000
 Cleartext protocols settings[checkbox]:Try to perform patch level 
checks over rexec = no
 Cleartext protocols settings[checkbox]:Try to perform patch level 
checks over rsh = no
 Cleartext protocols settings[checkbox]:Try to perform patch level 
checks over telnet = no
 Unknown CGIs arguments torture[checkbox]:Send POST requests = no
 Misc information on News server[checkbox]:No archive = no
 Misc information on News server[checkbox]:Local distribution = yes
 Misc information on News server[entry]:Max crosspost : = 7
 Misc information on News server[entry]:Test group name regex : = 
f[a-z]\.tests?
 Misc information on News server[entry]:From address : = Nessus 
<[EMAIL PROTECTED]>
 Do not scan fragile devices[checkbox]:Scan Novell Netware hosts = no
 Do not scan fragile devices[checkbox]:Scan Network Printers = no
 Oracle settings[checkbox]:Test default accounts (slow) = no
 Nessus TCP scanner[checkbox]:Network congestion detection = yes
 Nessus TCP scanner[checkbox]:Detect firewall = yes
 Nessus TCP scanner[checkbox]:Detect RST rate limitation = yes
 Nessus TCP scanner[checkbox]:Scan ports in random order = yes
 Kerberos configuration[radio]:Kerberos KDC Transport : = udp;tcp
 Kerberos configuration[entry]:Kerberos KDC Port : = 88
 HTTP login page[entry]:Login form fields : = user=%USER%&pass=%PASS%
 HTTP login page[entry]:Login page : = /
 Services[radio]:Test SSL based services = Known SSL ports;All;None
 Services[entry]:Wrapped service read timeout : = 2
 Services[entry]:Network read/write timeout : = 5
 Services[entry]:Network connection timeout : = 5
 Services[entry]:Number of connections done in parallel : = 6
 Ping the remote host[checkbox]:Test the local Nessus host = yes
 Ping the remote host[checkbox]:Log live hosts in the report = no
 Ping the remote host[checkbox]:Make the dead hosts appear in the report 
= no
 Ping the remote host[checkbox]:Do an applicative UDP ping (DNS,RPC...) = no
 Ping the remote host[entry]:Number of retries (ICMP) : = 6
 Ping the remote host[checkbox]:Do an ICMP ping = no
 Ping the remote host[checkbox]:Do a TCP ping = yes
 Ping the remote host[checkbox]:Do an ARP ping = yes
end(PLUGINS_PREFS)

begin(SERVER_INFO)
 server_info_nessusd_version = 3.0.6
 server_info_os_version = 2.4.27-2-386
 server_info_os = Linux
 server_info_thread_manager = fork
 server_info_libnessus_version = 3.0.6
 server_info_libnasl_version = 3.0.6
end(SERVER_INFO)

begin(RULES)
end(RULES)

begin(SERVER_PREFS)
 server_info_libnasl_version = 3.0.1
 log_whole_attack = yes
 trace_scan = no
 server_info_nessusd_version = 3.0.1
 ntp_detached_sessions = yes
 safe_checks = yes
 unscanned_closed = no
 kb_dont_replay_scanners = no
 kb_max_age = 864000
 only_test_hosts_whose_kb_we_have = no
 server_info_libnessus_version = 3.0.1
 throttle_scan = yes
 ntp_short_status = yes
 auto_update_delay = 24
 slice_network_addresses = no
 ntp_keep_communication_alive = yes
 cgi_path = /cgi-bin:/scripts
 ntp_opt_show_end = yes
 language = english
 only_test_hosts_whose_kb_we_dont_have = no
 plugins_timeout = 320
 kb_dont_replay_info_gathering = no
  kb_dont_replay_denials = no
 checks_read_timeout = 5
 save_knowledge_base = no
 non_simult_ports = 139, 445
 server_info_os = Linux
 optimize_test = yes
 max_hosts = 20
 kb_dont_replay_attacks = no
 reverse_lookup = no
 max_checks = 5
 silent_dependencies = yes
 auto_update = no
 port_range = default
 plugin_upload_suffixes = .nasl, .nasl3, .inc, .inc3, .nbin
 use_mac_addr = no
 server_info_thread_manager = fork
 ntp_client_accepts_notes = yes
 ntp_escape_crlf = yes
 auto_enable_dependencies = yes
 ntp_save_sessions = yes
 server_info_os_version = 2.6.9-5.ELsmp
 plugin_upload = yes
 kb_restore = no
end(SERVER_PREFS)



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