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Hi Thomas,

>> Logged with Debian, right? Packaging bugs don't belong in our tracker...
> 
> No, in *our* tracker, because the issue prevents us from upgrading to autoconf
> 2.60 (or later) for 5.5.

In fact autoconf 0.59c contains the relevant change:

* Major changes in Autoconf 2.59c

  Released 2006-04-12, by Ralf Wildenhues.

[...]
** AC_SUBST_FILE
  The substitution now occurs only when @variable@ is on a line by itself,
  optionally surrounded by spaces and tabs.  The whole line is replaced.

Thanks,
Jochen
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