Firat, There doesn't appear to be a good solution for communicating with parallel ports within the java standard library. The third-party RxTx library <http://rxtx.qbang.org/wiki/index.php/Main_Page> appears to be the best out there at present, although it doesn't look as though it's seen much development recently. You might look at that project and see if you could use it to write a NetLogo extension.
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