When disconnecting from a VPN  (in my case VPNC), NetworkManager flushes
all addresses from the physical device. Tracing it showed it doing:

  ip route del default
  ip addr flush dev eth1
  ip route flush dev eth1
  ip neigh flush all

This of course also blows away all the IPv6 addresses, including the 
link-local address required for stateless autoconf. The attached patch
against the 0.7.0 svn3138 snapshot used in Fedora 8 simply re-adds the
IPv6 link-local address after taking down the VPN connection. This
allows IPv6 autoconf to do its magic and restore connectivity.

This problem is also reported & unresolved in the Fedora BZ

  https://bugzilla.redhat.com/show_bug.cgi?id=233757

Regards,
Dan.
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diff -rup NetworkManager-0.7.0.orig/src/vpn-manager/nm-vpn-connection.c 
NetworkManager-0.7.0.new/src/vpn-manager/nm-vpn-connection.c
--- NetworkManager-0.7.0.orig/src/vpn-manager/nm-vpn-connection.c       
2007-11-14 11:00:59.000000000 -0500
+++ NetworkManager-0.7.0.new/src/vpn-manager/nm-vpn-connection.c        
2007-12-15 13:31:19.000000000 -0500
@@ -727,6 +727,7 @@ connection_state_changed (NMVPNConnectio
 
                        /* Reset routes, nameservers, and domains of the 
currently active device */
                        nm_system_device_set_from_ip4_config (priv->parent_dev);
+                       nm_system_device_add_ip6_link_address 
(priv->parent_dev);
                }
 
                if (priv->banner) {
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