Hi Yaroslav, Thanks for the quick response. I will let you know how the testing goes as soon as the update hits.
best, Stephen -- voice and txt: 352-358-1110 On Mon, Sep 2, 2013 at 8:30 PM, Yaroslav Halchenko <[email protected]>wrote: > Hi Stephen, > > A friend of ours already emailed us a similar report and we nearly called > him a > lier since "it works for us" (on Debian systems) and he did not provide > details > about his system. Your report had all relevant information to reproduce > this > issue specific to some elderly Ubuntus -- thanks! > > Meanwhile you could try to mitigate this by prepending calls to those > commands > with > > LD_PRELOAD=/usr/lib/afni/lib/libafni_warp.so > > which should provide that symbol and which librickr.so should have been > linked against. We will provide fixed build tomorrow or day after the > latest. > > Cheers, > > On Mon, 02 Sep 2013, Stephen Towler wrote: > > > Hello neurodebian uesrs, > > Anyone else having problems with most recent afni binaries on 64-bit > > platforms? 3dcalc and 3dinfo (and maybe others) are producing error > > "symbol lookup error: /usr/lib/afni/lib/librickr.so: undefined symbol: > > AFNI_dataset_slice" > > Details:� > > ----------- active afni version and variables: ----------- > > Version AFNI_2011_12_21_1014 > > [[Precompiled binary =Debian-i686-1-gnu: Aug 31 2013]] > > The command 'afni' will launch: /usr/bin/afni > > The command '3dinfo' will launch: /usr/lib/afni/bin/3dinfo > > AFNI environmental variables, if any exist: > > AFNI_PLUGINPATH=/usr/lib/afni/plugins > > AFNI_TTATLAS_DATASET=/usr/share/afni/atlases > > AFNI_IMSAVE_WARNINGS=NO > > AFNI_MODELPATH=/usr/lib/afni/models > > ---------------------------------------------------------- > > # at least two commands give the same error: > > stowler-local@larry:~$ 3dcalc > > 3dcalc: symbol lookup error: /usr/lib/afni/lib/librickr.so: undefined > > symbol: AFNI_dataset_slice > > stowler-local@larry:~$ 3dinfo > > 3dinfo: symbol lookup error: /usr/lib/afni/lib/librickr.so: undefined > > symbol: AFNI_dataset_slice > > # doesn't look like there's version confusion, as there's only one > > librickr.so: > > stowler-local@larry:~$ find /usr/lib/afni | grep librickr > > /usr/lib/afni/lib/librickr.so > > # host and library info to help the maintainers troubleshoot: > > stowler-local@larry:~$ uname -a > > Linux [1]larry.birc.emory.edu 3.2.0-52-generic-pae #78-Ubuntu SMP > Fri Jul > > 26 16:43:19 UTC 2013 i686 i686 i386 GNU/Linux > > stowler-local@larry:~$ file /usr/lib/afni/lib/librickr.so > > /usr/lib/afni/lib/librickr.so: ELF 32-bit LSB shared object, Intel > 80386, > > version 1 (SYSV), dynamically linked, > > BuildID[sha1]=0xf3dbd827219f30b6bf68849be2e22890b20df8fe, stripped > > stowler-local@larry:~$ cat > > /etc/apt/sources.list.d/neurodebian.sources.list� > > deb [2]http://masi.vuse.vanderbilt.edu/neurodebian data main contrib > > non-free > > #deb-src [3]http://masi.vuse.vanderbilt.edu/neurodebian data main > contrib > > non-free > > deb [4]http://masi.vuse.vanderbilt.edu/neurodebian precise main > contrib > > non-free > > #deb-src [5]http://masi.vuse.vanderbilt.edu/neurodebian precise main > > contrib non-free > > Thanks, > > Stephen > -- > Yaroslav O. Halchenko, Ph.D. > http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org > Senior Research Associate, Psychological and Brain Sciences Dept. > Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755 > Phone: +1 (603) 646-9834 Fax: +1 (603) 646-1419 > WWW: http://www.linkedin.com/in/yarik >
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