Hi All,

I’m trying to run some randomise_parallel jobs on our cluster (SGE, running on 
Ubuntu/Debian) and although the SEED images are being generated, they are not 
being defragmented. If I look in LAc30_logs/LAc30.defragment.e1332 I see a 
whole load of these errors:

/rdsfhome/om7253/Documents/Group/RANDOMISE/OUTPUT/LAc30/LAc30.defragment: 1: 
/rdsfhome/om7253/Documents/Group/RANDOMISE/OUTPUT/LAc30/LAc30.defragment: Bad 
substitution
….
….
lots and lots….

Any tips on how to over-come this? FYI we’re using the neurodebian FSL 
repositories (5.0.4 - I think).

Cheers, Jon
--
Jonathan Brooks (PhD) - Senior Research Fellow
CRiCBristol, University of Bristol, St Michael's Hill, Bristol, UK
T: +44(0)117-342-1512 W: http://www.cricbristol.ac.uk


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