On Thu, 19 Jun 2014, Dillon Niederhut wrote: > Thanks for the comments! Sorry for not being more precise. I installed FSL > from the neurodebian repo, and all the normal stuff works fine. The good > folks at FMRIB have sent me some experimental analysis tools that require > setup and compiling. I could not get them to compile using the files and > instructions they sent. The readme essentially says to untar the folder > (which contains a makefile, dependencies, etc), run > $ . setup.sh > , then run > $ make > It seems that my installation is lacking "a compatible devel package", > which has the default make, config, and include files that the setup > scripts were expecting. > I've been told that I have two options: > 1. Uninstall neurodebian FSL and try to build the source FSL myself
probably not even needed to uninstall neurodebian FSL since it is not in the way unless you source /etc/fsl/fsl.sh. > 2. Download the source version of FSL, then customize those config files > to match the neurodebian libraries and executables I guess you could indeed a. fakeroot debian/rules install # should build and install under debian/ b. and then build your custom tool using this freshly built fsl > My questions would more precisely have been stated as: > 1. Does neurodebian already have the FSL devel package? If so, how can I > install it? not that I am aware of, Michael would know better > 2. If not, is there documentation on editing source FSL config files to > work with neurodebian? all the patches are under debian/patches and all the 'build' steps are within debian/rules -- but that one is quite "evolved" by now > I've attached the makefile, in case that will be of any help. > Running: > $ sudo apt-get build-dep fsl > throws this dependency error: > <The following packages have unmet dependencies: > libgd2-noxpm-dev : Depends: libgd2-noxpm (= 2.0.36~rc1~dfsg-6ubuntu2) but > it is not going to be installed what is output of apt-cache policy libgd2-noxpm-dev libgd2-noxpm ? -- Yaroslav O. Halchenko, Ph.D. http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org Research Scientist, Psychological and Brain Sciences Dept. Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755 Phone: +1 (603) 646-9834 Fax: +1 (603) 646-1419 WWW: http://www.linkedin.com/in/yarik _______________________________________________ Neurodebian-users mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/neurodebian-users
