Hi list, I'm using FSL 5.0. I'm trying to pass SienaX (fsl5.0-sienax) an option; according to the documentation[1], it should be possible to pass the optional parameter -B to change the BET defaults, e.g
fsl5.0-sienax foo_bar -B "-f 0.3" In my case, every attempt to pass a value with the -B option has been unsuccessful. Running sienax as in the example above returns immediately the message "Usage: sienax <input> [options] etc etc" (as if I'm not using it correctly). Interestingly, if I run: fsl5.0-sienax foo_bar -B "" I get a meaningful error message: /usr/share/fsl/5.0/bin/sienax: 121: shift: can't shift that many Furthermore, running fsl5.0-sienax foo_bar -B "-f" Similarly seem to return other errors, that suggest (at least, to me) that the parameter is interpreted correctly: Image Exception : #22 :: ERROR: Could not open image I_brain Cannot open volume I_brain for reading! Image Exception : #22 :: ERROR: Could not open image I_brain Image Exception : #22 :: ERROR: Could not open image I_brain terminate called after throwing an instance of 'RBD_COMMON::BaseException' Aborted Image Exception : #22 :: ERROR: Could not open image I_grot Error in slicer input, exiting... [snip] However, as soon as I pass any actual value (e.g. -B "-f 0.4"; -B "-f 0.2" etc) I get "Usage: sienax <input> [options] etc etc". I must be missing something obvious. Any pointer would be much appreciated. Thanks, Lorenzo [1] http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/SIENA/UserGuide#Usage-1 _______________________________________________ Neurodebian-users mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/neurodebian-users
