You need to change your FSTAB entries to point to the new scsi emulated
CD's,  ie - something along the lines of:

/dev/sr0    /mnt/cdwriter     etc. etc.
/dev/sr1    /mnt/cdreader    etc. etc.

Also if you use graphical mounting via icons under KDE or Gnome, you will
need to do the same there.

As far as the kernel size is concerned when you recompiled, did you do a
'make zImage' or a 'make bzImage'. Since kernel 2.2.x i have not been able
to get a kernel small enough without doing the bzImage, but i've not yet had
problems where i've had to sacrifice stuff to module status.

You don't have to do anything else different apart from the make command
above.

Martin.

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