Hello, Attached is a patch to perl-packges.nix to include bio-perl and its dependencies.
Is perl-packages.nix automatically generated from cpan? If so is the code publicly available? Thanks, Tim
>From 8d35968c530d71cc748eed0caef8774d26eb4e5b Mon Sep 17 00:00:00 2001 From: Tim Horton <[email protected]> Date: Thu, 24 Jun 2010 12:53:20 -0700 Subject: [PATCH] Added bioperl-1.6.2 and basic dependencies --- pkgs/top-level/perl-packages.nix | 18 ++++++++++++++++++ 1 files changed, 18 insertions(+), 0 deletions(-) diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix index dadc869..c171b0b 100644 --- a/pkgs/top-level/perl-packages.nix +++ b/pkgs/top-level/perl-packages.nix @@ -150,6 +150,15 @@ rec { propagatedBuildInputs = [SubExporter VariableMagic]; }; + BioPerl = buildPerlPackage rec { + name = "BioPerl-1.6.1"; + src = fetchurl { + url = "mirror://cpan/authors/id/C/CJ/CJFIELDS/${name}.tar.gz"; + sha256 = "18wmvkfvsaz0d63wlwi8czyhbb5yb28y5k02gdb77nad5g7dldmc"; + }; + propagatedBuildInputs = [DataStag DBFile IOString]; + }; + BitVector = buildPerlPackage { name = "Bit-Vector-6.4"; src = fetchurl { @@ -810,6 +819,15 @@ rec { propagatedBuildInputs = [TestException ClassAccessorChained]; }; + DataStag = buildPerlPackage rec { + name = "Data-Stag-0.11"; + src = fetchurl { + url = "mirror://cpan/authors/id/C/CM/CMUNGALL/${name}.tar.gz"; + sha256 = "1cisnn3cwqx1gwwb7vnfxz6bbvk521imwmq6zd2n8a2i0gxqdnk9"; + }; + propagatedBuildInputs = [IOString]; + }; + DataVisitor = buildPerlPackage rec { name = "Data-Visitor-0.25"; src = fetchurl { -- 1.7.1
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