I don't know if this will solve all your problems but you need to use gfortran 4.5. or higher with NONMEM 7.
----- Original Message ----- From: "Anne Drescher" <[email protected]> To: [email protected] Sent: Friday, January 14, 2011 5:17:27 AM Subject: [NMusers] Installation NM7 Problem GCC Linux Red Hat Dear all, we are installing NM7 on an Linux cluster using following compiler: GNU Fortran (GCC) 4.1.2 20080704 (Red Hat 4.1.2-48) using following command /bin/bash SETUP7 /root/Nonmem7/NONMEM_7.1.0/ /local/nm7 gfortran y ar same rec i Unfortunatelly we were not very successfull: Compiler-output during installation: Warning: Reading file '<stdin>' as free form. (several times) Finishing message: In file g95linux.f:441 FUNCTION GETCHARQQ2() BIND(C) 1 Error: Unexpected junk after function declaration at (1) In file g95linux.f:442 INTEGER :: GETCHARQQ2 1 Error: Symbol 'getcharqq2' at (1) has already been host associated In file g95linux.f:443 END FUNCTION GETCHARQQ2 1 Error: Expecting END INTERFACE statement at (1) In file g95linux.f:447 IGETC=GETCHARQQ2() 1 Error: Function 'getcharqq2' at (1) has no IMPLICIT type In file g95linux.f:492 FUNCTION PEEKCHARQQ2() BIND(C) 1 Error: Unexpected junk after function declaration at (1) In file g95linux.f:493 LOGICAL :: PEEKCHARQQ2 1 Error: Symbol 'peekcharqq2' at (1) has already been host associated In file g95linux.f:494 END FUNCTION PEEKCHARQQ2 1 Error: Expecting END INTERFACE statement at (1) In file g95linux.f:497 PEEKCHARQQ=PEEKCHARQQ2() 1 Error: Can't convert REAL(4) to LOGICAL(4) at (1) ar: creating nonmem.a nonmem.a has been created nmtran.exe has been created These are the error messages while perfoming the test: -:(.text+0x9d7): undefined reference to `idble_reclength_' /local/nm7/nm/nonmem.a(btools1part013.o): In function `progname_': -:(.text+0x34): undefined reference to `nargs_' -:(.text+0x6a): undefined reference to `rindex_' /local/nm7/nm/nonmem.a(btools1part017.o): In function `bayes_': -:(.text+0x69d): undefined reference to `isnan_' /local/nm7/nm/nonmem.a(btools1part021.o): In function `winbug_sample_make_': -:(.text+0xde2): undefined reference to `isnan_' -:(.text+0xf8d): undefined reference to `isnan_' -:(.text+0x11f6): undefined reference to `isnan_' -:(.text+0x1e40): undefined reference to `isnan_' /local/nm7/nm/nonmem.a(btools3part010.o):-:(.text+0x140): more undefined references to `isnan_' follow /local/nm7/nm/nonmem.a(stools3part010.o): In function `fget_fourth_': -:(.text+0x42): undefined reference to `idble_reclength_' /local/nm7/nm/nonmem.a(stools3part011.o): In function `fput_fourth_': -:(.text+0x49): undefined reference to `idble_reclength_' collect2: ld returned 1 exit status No nonmem execution. You should now compare REPORT5.txt vs. REPORT5IDS.txt Values should be similar. E.g., the following should be identical: grep #OBJV: REPORT5.txt grep: REPORT5.txt: No such file or directory grep #OBJV: REPORT5IDS.txt #OBJV:******************************************** 104.561 ************************************************** Any ideas? Thank you in advance and best regards Anne ------------------------------------------------ Anne Drescher Martin-Luther-Universitaet Halle-Wittenberg Institute of Pharmacy Department of Clinical Pharmacy Wolfgang-Langenbeck-Str. 4 D-06120 Halle Germany Tel.: +49 345-55 25206 Fax.: +49 345-55 27257
