Hi Bob, Have you tried to use the option -rerun in PsN?
Here's the details from their manual: -rerun='integer' Default 1. PsN can redo or resume a run using information in PsN run directory(see documentation for -directory). It is called a rerun. During a rerun PsN will consider to redo parts of the run. With the -rerun option you can control which parts will be redone. With rerun set to 1 PsN will rerun any model with a missing list file. Notice that every "retry" (see the documentation for -retries and -min_retries) will be considered for a rerun. This means you can change the value of the -retries and -min_retries options if you like more or less retries. Setting -rerun to 0 means that PsN will not check for missing or incomplete "retry" list files. This is useful if you have one or more run model-files and you wish to have a PsN raw_results file. You do a run with them as arguments and specify -rerun=0, PsN will not do any NONMEM run, but produce useful output summary. You can also set -rerun to 2, and PsN will ignore any existing list files and rerun everything, creating raw_results from the new listfiles. Hope it helps. Karina R. Vega-Villa, Ph.D. Post-Doctoral Research Associate Mailing Address: The University of Oklahoma College of Pharmacy P.O. Box 26901 Oklahoma City, OK 73126-0901 Building Address: The University of Oklahoma College of Pharmacy Department of Pharmaceutical Sciences, Rm. 323 1110 N. Stonewall Ave. Oklahoma City, OK 73117 Phone: (405) 271-6593 x 43831 Fax: (405) 271-7505 email: [email protected] ________________________________________ From: [email protected] [[email protected]] On Behalf Of Leonid Gibiansky [[email protected]] Sent: Tuesday, August 14, 2012 12:37 PM To: [email protected] Cc: Ron Keizer; Hiker Hiker; [email protected] Subject: Re: [NMusers] restart NONMEM Actually, it is useful, we did is many times (but then got a better UPS :) ) Leonid On 8/14/2012 12:37 PM, [email protected] wrote: > Hello Everyone, > It seems like the $MSFI is not useful if the NONMEM job crash due to, > for example, power outage. Are there any other way to resturt the > program in this case? > Thank you, > Pavel > > ----- Original Message ----- > From: Ron Keizer > Date: Tuesday, August 14, 2012 10:33 am > Subject: Re: [NMusers] restart NONMEM > To: Hiker Hiker > Cc: "[email protected]" > > > hi Bob, > > Pirana has a function "Duplicate for MSF restart", which takes > > care of > > making the changes in the model required for an MSF-restart. > > With a few > > mouseclicks your model will be on his/her way again... > > Additionally, PsN's execute has the "-handle_msfo" argument > > which should > > take care of this automatically. However, the argument is > > labelled > > "experimental", and is not further detailed in the help... so > > you'll > > have to see for yourself if that works. > > cheers, > > Ron > > > > > > On 8/14/12 1:28 PM, Hiker Hiker wrote: > > > > > > Dear NONMEN Users: > > > What are the most efficient ways to restart NONMEM if it is > > > interrupted? NONMEM allows only one MSFO statement when several > > > methods are used. > > > Can supporting software packages such as PsN, xpose, wings of > > > NONMEM, etc. help? > > > Cheers, > > > Bob > > > > > > > > > -- > > > ----------------------------------- > > > Ron Keizer, PharmD PhD > > > Post-doctoral fellow > > > Pharmacometrics Research Group > > > Uppsala University > > > ----------------------------------- > > > Pirana Software & Consulting BV > > > Sweden / the Netherlands > > > www.pirana-software.com > > > ----------------------------------- > > > > No virus found in this message. > Checked by AVG - www.avg.com <http://www.avg.com> > Version: 2012.0.2197 / Virus Database: 2437/5200 - Release Date: 08/14/12 >
