Shirley,
An interesting new possibility is the xml output. Using the XML package from
CRAN, this can be read in R as follows:
library(XML)
x <- xmlTreeParse("yourmodel.xml", getDTD=F)
r <- xmlRoot(x)
To see what is there:
names(r[['nonmem']][['problem']][['estimation']])
So for example:
xmlValue(r[['nonmem']][['problem']][['estimation']][['final_objective_function']])
Best regards,
Erik
________________________________________
From: [email protected] [[email protected]] on behalf of
Hou, Xiaoli Shirley [[email protected]]
Sent: Sunday, September 02, 2012 11:49 PM
To: NONMEM
Subject: RE: [NMusers] single-patient AUC
Dear NM-Users,
I am doing a simulation using R, in which the within and between subject
variations, "EPSILON" and "OMEGA", are needed. They are automatically listed in
the ***.lst file of the NONMEM outputs. Is there a way I can read them from my
NONMEM output into R?
Thanks,
Shirley
Dr. Xiaoli Shirley Hou
Senior Biometrician, ECDS
351 N. Sumneytown Pike, UG1C36
North Wales, PA. 19454.
Phone (540) 381-9599
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