should it be IF(MIXEST.EQ.2) Z=0 for the fitting run?
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Leonid Gibiansky, Ph.D.
President, QuantPharm LLC
web: www.quantpharm.com
e-mail: LGibiansky at quantpharm.com
tel: (301) 767 5566
On 5/7/2013 11:31 AM, Paul Hutson wrote:
Dear Users:
I note the Jan 26, 2013 response to Nick Holford's query about results
from the use of the $MIX mixture model for simulation. I have created a
data set of N=100 subjects using R to randomly distribute their
covariates, both continuous and categorical. I then ran the following
sim with SUBPOP=1 to generate their corresponding DV values using the
following code:
; SIMULATION CTL
$PROBLEM SIM 2COMP
$INPUT ID TIME AMT DV WT HT BMI BSA GFR AGE SEX TOB EVID
$DATA MethodSim1.CSV IGNORE=#
$SUBROUTINES ADVAN4 TRANS4
$SIMULATION (12345) SUBPROBLEMS=1 ONLYSIMULATION
$MIX
NSPOP=2
P(1)=THETA(7)
P(2)=1.0-THETA(7)
$PK
KA=THETA(1)* EXP(ETA(1)); ETA removed in subsequent fitting of data
CL1=THETA(2)*((WT/70)**0.75) ; non-renal clearance of subpop1
CL2=THETA(3)*((WT/70)**0.75); non-renal clearance of subpop1
CLr=(GFR*60/1000)*0.5 ; renal clearance
Z=1
IF(MIXNUM.EQ.2) Z=0
CL=(Z*(CL1 + CLr) + (1.0-Z)*(CL2 + CLr))* EXP(ETA(2))
V2 = THETA(4)*(WT/70)*EXP(ETA(3))
Q = THETA(5)*(WT/70)**0.75
V3 =THETA(6)*(WT/70)
S2=V2
$ERROR
IPRE = F
W1=F
DEL = 0
IF(IPRE.LT.0.001) DEL = 1
IRES = DV-IPRE; NEGATIVE TREND IS OVERESTIMATING IPRED WRT DV
IWRE = IRES/(W1+DEL)
Y=F*(1+ERR(1))
$THETA (2); KAS
$THETA (0.1); CL1
$THETA (5); CL2
$THETA (5); VC
$THETA (12); Q
$THETA (40); VP
$THETA (0.4); FZ
$OMEGA 0 FIXED; IEKA
$OMEGA 0 FIXED; IECL
$OMEGA 0 FIXED; IEV2
$SIGMA 0.03;
$TABLE ID TIME AMT DV WT HT BMI BSA GFR AGE SEX TOB EVID NOPRINT
NOHEADER NOAPPEND FILE=SimData.txt
However, when I come back and attempt to model the simulated data set,
my ETA1 on CL (note difference from the simulation ctl above) still
shows a bimodal distribution. With the incorporation of the $MIXture
model , I would expect a unimodal distribution of ETA_CL entered on 0.
Can the community please advise?
;FITTED CTL
$MIX
NSPOP=2
P(1)=THETA(7)
P(2)=1.0-THETA(7)
$PK
KA=THETA(1)
CL1=THETA(2)*((WT/70)**0.75)
CL2=THETA(3)*((WT/70)**0.75)
RS=THETA(8)
CLr=(GFR*60/1000)*RS
Z=1
IF(MIXNUM.EQ.2) Z=0
CL=((Z*CL1 + CLr) + ((1.0-Z)*CL2 + CLr))*EXP(ETA(1))
V2 = THETA(4)*(WT/70)*EXP(ETA(2)
Q = THETA(5)*(WT/70)**0.75
V3 =THETA(6)*(WT/70)
Thanks
Paul
