Dear All
I have followed suggestions on how to make MPI work with NONMEM7.2
installed on window7 and complied with gfortran. But still I am getting the
error.
My computer processor is i7-3615QM CPU, 8GB RAM, 64-bit. Can some one
elaborate the steps on how to make this work.
Below is a copy of my command prompt
Regards Eliford
Microsoft Windows [Version 6.1.7601]
Copyright (c) 2009 Microsoft Corporation. All rights reserved.
C:\windows\system32>cd \program files\MPICH2\examples
C:\Program Files\MPICH2\examples>mpiexec -n 4 cpi.exe
Enter the number of intervals: (0 quits) 2
pi is approximately 3.1623529411764704, Error is 0.0207602875866773
wall clock time = 0.000640
Enter the number of intervals: (0 quits) 2
C:\Program Files\MPICH2\examples>mpiexec -n 2 hostname
Samsung-PC
Samsung-PC
C:\Program Files\MPICH2\examples>cd C:\Users\Samsung\Documents\Research
Projects
\study 5\Mixture\parallel cmpting
C:\Users\Samsung\Documents\Research Projects\study 5\Mixture\parallel
cmpting>nm
fe72 foce_parallel.ctl foce_parallel.res -parafile=mpiwini8.pnm [nodes]=4
doing nmtran
WARNINGS AND ERRORS (IF ANY) FOR PROBLEM 1
(WARNING 2) NM-TRAN INFERS THAT THE DATA ARE POPULATION.
CREATING MUMODEL ROUTINE...
1 file(s) copied.
Finished compiling fsubs
USING PARALLEL PROFILE mpiwini8.pnm
MPI TRANSFER TYPE SELECTED
Completed call to gfcompile.bat
Starting MPI version of nonmem execution ...
Could Not Find C:\Users\Samsung\Documents\Research Projects\study
5\Mixture\para
llel cmpting\output
On Mon, May 20, 2013 at 8:30 PM, Adams, Jeb <[email protected]> wrote:
> Not sure if your issue ever got fixed, I don't check this mailing-list
> very often.
>
> If using gfortran, you need to make sure you are updating the files in
> \mpi\mpi_wing, not mpi_wini.
>
> You should install a more recent version of MPICH and replace the files in
> the mpi subfolders as Rik recommends. To check the health of MPI, in a cmd
> window run:
> smpd -install
> mpiexec -register (filling out as required)
>
> and then do something harmless like:
> mpiexec -n 2 hostname
>
> That should report the hostname twice if all is well.
>
> Jeb Adams, Research Operations Manager
> PKDM IS Liaison
> ~~~~~~~~~~~~~~~~~~
> [email protected]
>
> From: [email protected] [mailto:[email protected]]
> On Behalf Of Fisher Dennis
> Sent: Monday, April 01, 2013 10:41 AM
> To: [email protected]
> Cc: Rik Schoemaker
> Subject: [NMusers] parallelization in Windows with gfortran
>
> Colleagues
>
> I am configuring the -parafile option in Windows using gfortran. I am
> able to run FPI but I am not successful with MPI. I installed 64-bit MPI
> using the instructions suggested by Rik Schoemaker including copying
> fmpich2.lib to mpi_wini. I am reasonably sure that my mpich installation
> is OK because when I used a different passphrase during configuration of
> MPI, I got a message that to the effect of "credentials failed". I then
> repeated the command mpiexec -register with the correct passphrase.
>
> Because I am using gfortran, I also copied fmpich2.lib to mpi_wing.
> I also tried fmpich2g.lib in these locations.
>
> Whenever I attempt to execute nonmem with:
> nmfe72 foce_parallel.ctl outputfile -parafile=mpiwini8.pnm
> [nodes]=4
> I get:
>
> WARNINGS AND ERRORS (IF ANY) FOR PROBLEM 1
>
> (WARNING 2) NM-TRAN INFERS THAT THE DATA ARE POPULATION.
> CREATING MUMODEL ROUTINE...
> 1 file(s) copied.
> Finished compiling fsubs
>
> USING PARALLEL PROFILE mpiwini8.pnm
> MPI TRANSFER TYPE SELECTED
> Completed call to gfcompile.bat
> Starting MPI version of nonmem execution ...
> Could Not Find C:\nm72-gfortran\my.mpi\output
>
> I tried various other pnm files (including the node3.pnm proposed by
> Schoemaker, all yielding the same failure. Does anyone have any
> suggestions as to how to make this work?
>
> Dennis
>
>
> Dennis Fisher MD
> P < (The "P Less Than" Company)
> Phone: 1-866-PLessThan (1-866-753-7784)
> Fax: 1-866-PLessThan (1-866-753-7784)
> www.PLessThan.com
>
>
>
>
--
Eliford Kitabi
Lecturer, Unit of Pharmacology and Therapeutics
Muhimbili University of Health and Allied Sciences
P.O.box 65013
United National Road
Upanga, Dar es salaam
Tanzania
mobile: +255718221480
Joy is my target
