Dear NMusers,
Recently I need to execute NONMEM 7.4 from Rstudio terminal. I have tried the
following scripts:
1. `system2("execute FIT_01.mod")` #Through PsN,
using `system2`
2. `shell("execute FIT_01.mod")` #Through
PsN, using `shell`
3. `write("execute FIT_01.mod", "FIT_01.bat")`
`shell("FIT_01.bat")` #Through
PsN, using `shell` to call a batch file
4. `write("execute FIT_01.mod", "FIT_01.bat")`
`shell.exec("FIT_01.bat")` #Through
PsN, using `shell.exec` to call a batch file
5. The above commands, but call through C:/nm74g64/run/nmfe74.bat directly
The above were also tested using the test dataset `CONTROL5`
Results:
1. gave me the `running command '"execute FIT_01.mod"' had status 127`
warning without any execution
(2)-(4) gave me the following messages:
Starting 1 NONMEM executions. 1 in parallel.
S:1 ..
All executions started.
Starting NMTRAN
NMtran failed. There is no output for model 1. Contents of FMSG:
Not restarting this model.
F:1 ..
execute done
(5) similar to (1) but the status/error code became 107
None of the above has led to a successful NONMEM run. But the above command
lines work when outside R (i.e. through `cmd` +/- PsN)
Is there anyone experiencing the same issue?
System/software info:
OS: Windows 10
NONMEM v7.4
R3.4.2
Rstudio v1.1.383
Best regards,
Matthew Hui
PhD Student
School of Pharmacy
Faculty of Medicine
The Chinese University of Hong Kong
