See <https://builds.apache.org/job/ctakes-trunk-compiletest/279/changes>
Changes: [tmill] Completed method for event argument extraction. ------------------------------------------ [...truncated 6559 lines...] 05 Jun 2013 23:36:15 INFO CopyAnnotator - process(JCas) 05 Jun 2013 23:36:15 INFO OverlapAnnotator - process(JCas) 05 Jun 2013 23:36:15 INFO DictionaryLookupAnnotator - process(JCas) 05 Jun 2013 23:36:15 INFO MaxentParserWrapper - Started processing: doc2_07543210_sample_past_smoker.txt ....ended with 0 vectors. 05 Jun 2013 23:36:15 INFO MipacqSvmChainCreator - Classifying coreference in document: doc2_07543210_sample_past_smoker.txt 05 Jun 2013 23:36:15 INFO MipacqSvmChainCreator - Done classifying document: doc2_07543210_sample_past_smoker.txt 05 Jun 2013 23:36:15 INFO CasConsumer - Started 05 Jun 2013 23:36:15 INFO SentenceDetector - Starting processing. 05 Jun 2013 23:36:15 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 05 Jun 2013 23:36:15 INFO LvgAnnotator - process(JCas) 05 Jun 2013 23:36:15 INFO ContextDependentTokenizerAnnotator - process(JCas) 05 Jun 2013 23:36:15 INFO POSTagger - process(JCas) 05 Jun 2013 23:36:15 INFO Chunker - process(JCas) 05 Jun 2013 23:36:15 INFO CopyAnnotator - process(JCas) 05 Jun 2013 23:36:15 INFO OverlapAnnotator - process(JCas) 05 Jun 2013 23:36:15 INFO DictionaryLookupAnnotator - process(JCas) 05 Jun 2013 23:36:15 INFO MaxentParserWrapper - Started processing: testpatient_plaintext_2.txt ....ended with 0 vectors. 05 Jun 2013 23:36:16 INFO MipacqSvmChainCreator - Classifying coreference in document: testpatient_plaintext_2.txt 05 Jun 2013 23:36:16 INFO MipacqSvmChainCreator - Done classifying document: testpatient_plaintext_2.txt 05 Jun 2013 23:36:16 INFO CasConsumer - Started 05 Jun 2013 23:36:16 INFO SentenceDetector - Starting processing. 05 Jun 2013 23:36:16 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 05 Jun 2013 23:36:16 INFO LvgAnnotator - process(JCas) 05 Jun 2013 23:36:16 INFO ContextDependentTokenizerAnnotator - process(JCas) 05 Jun 2013 23:36:16 INFO POSTagger - process(JCas) 05 Jun 2013 23:36:16 INFO Chunker - process(JCas) 05 Jun 2013 23:36:16 INFO CopyAnnotator - process(JCas) 05 Jun 2013 23:36:16 INFO OverlapAnnotator - process(JCas) 05 Jun 2013 23:36:16 INFO DictionaryLookupAnnotator - process(JCas) 05 Jun 2013 23:36:17 INFO MaxentParserWrapper - Started processing: SampleInputRadiologyNotes.txt ....ended with 2 vectors. 05 Jun 2013 23:36:19 INFO MipacqSvmChainCreator - Classifying coreference in document: SampleInputRadiologyNotes.txt 05 Jun 2013 23:36:19 INFO MipacqSvmChainCreator - Done classifying document: SampleInputRadiologyNotes.txt 05 Jun 2013 23:36:19 INFO CasConsumer - Started 05 Jun 2013 23:36:19 INFO SentenceDetector - Starting processing. 05 Jun 2013 23:36:19 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 05 Jun 2013 23:36:20 INFO LvgAnnotator - process(JCas) 05 Jun 2013 23:36:20 INFO ContextDependentTokenizerAnnotator - process(JCas) 05 Jun 2013 23:36:20 INFO POSTagger - process(JCas) 05 Jun 2013 23:36:20 INFO Chunker - process(JCas) 05 Jun 2013 23:36:20 INFO CopyAnnotator - process(JCas) 05 Jun 2013 23:36:20 INFO OverlapAnnotator - process(JCas) 05 Jun 2013 23:36:20 INFO DictionaryLookupAnnotator - process(JCas) 05 Jun 2013 23:36:20 INFO MaxentParserWrapper - Started processing: testfakenote.txt ....ended with 5 vectors. 05 Jun 2013 23:36:20 INFO MipacqSvmChainCreator - Classifying coreference in document: testfakenote.txt 05 Jun 2013 23:36:21 INFO MipacqSvmChainCreator - Done classifying document: testfakenote.txt 05 Jun 2013 23:36:21 INFO CasConsumer - Started 05 Jun 2013 23:36:21 INFO SentenceDetector - Starting processing. 05 Jun 2013 23:36:21 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 05 Jun 2013 23:36:21 INFO LvgAnnotator - process(JCas) 05 Jun 2013 23:36:21 INFO ContextDependentTokenizerAnnotator - process(JCas) 05 Jun 2013 23:36:21 INFO POSTagger - process(JCas) 05 Jun 2013 23:36:21 INFO Chunker - process(JCas) 05 Jun 2013 23:36:21 INFO CopyAnnotator - process(JCas) 05 Jun 2013 23:36:21 INFO OverlapAnnotator - process(JCas) 05 Jun 2013 23:36:21 INFO DictionaryLookupAnnotator - process(JCas) 05 Jun 2013 23:36:21 INFO MaxentParserWrapper - Started processing: sample_note_plaintext ....ended with 2 vectors. 05 Jun 2013 23:36:21 INFO MipacqSvmChainCreator - Classifying coreference in document: sample_note_plaintext 05 Jun 2013 23:36:21 INFO MipacqSvmChainCreator - Done classifying document: sample_note_plaintext 05 Jun 2013 23:36:21 INFO CasConsumer - Started 05 Jun 2013 23:36:21 INFO SentenceDetector - Starting processing. 05 Jun 2013 23:36:21 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 05 Jun 2013 23:36:21 INFO LvgAnnotator - process(JCas) 05 Jun 2013 23:36:21 INFO ContextDependentTokenizerAnnotator - process(JCas) 05 Jun 2013 23:36:21 INFO POSTagger - process(JCas) 05 Jun 2013 23:36:21 INFO Chunker - process(JCas) 05 Jun 2013 23:36:21 INFO CopyAnnotator - process(JCas) 05 Jun 2013 23:36:21 INFO OverlapAnnotator - process(JCas) 05 Jun 2013 23:36:21 INFO DictionaryLookupAnnotator - process(JCas) 05 Jun 2013 23:36:21 INFO MaxentParserWrapper - Started processing: text1.txt ....ended with 1 vectors. 05 Jun 2013 23:36:21 INFO MipacqSvmChainCreator - Classifying coreference in document: text1.txt 05 Jun 2013 23:36:21 INFO MipacqSvmChainCreator - Done classifying document: text1.txt 05 Jun 2013 23:36:21 INFO CasConsumer - Started 05 Jun 2013 23:36:21 INFO SentenceDetector - Starting processing. 05 Jun 2013 23:36:21 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 05 Jun 2013 23:36:21 INFO LvgAnnotator - process(JCas) 05 Jun 2013 23:36:21 INFO ContextDependentTokenizerAnnotator - process(JCas) 05 Jun 2013 23:36:21 INFO POSTagger - process(JCas) 05 Jun 2013 23:36:21 INFO Chunker - process(JCas) 05 Jun 2013 23:36:21 INFO CopyAnnotator - process(JCas) 05 Jun 2013 23:36:21 INFO OverlapAnnotator - process(JCas) 05 Jun 2013 23:36:21 INFO DictionaryLookupAnnotator - process(JCas) 05 Jun 2013 23:36:21 INFO MaxentParserWrapper - Started processing: sample_note ....ended with 2 vectors. 05 Jun 2013 23:36:21 INFO MipacqSvmChainCreator - Classifying coreference in document: sample_note 05 Jun 2013 23:36:21 INFO MipacqSvmChainCreator - Done classifying document: sample_note 05 Jun 2013 23:36:21 INFO CasConsumer - Started 05 Jun 2013 23:36:21 INFO RegressionPipelineTest - Completed 12 documents 05 Jun 2013 23:36:21 INFO RegressionPipelineTest - Verifying Test Output: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/doc1_07543210_sample_unknown.txt.xml> Exception in thread "BaseCPMImpl-Thread" junit.framework.AssertionFailedError: Verifying Test Output: doc1_07543210_sample_unknown.txt.xmlorg.custommonkey.xmlunit.Diff [different] Expected number of child nodes '51269' but was '51173' - comparing <CAS...> at /CAS[1] to <CAS...> at /CAS[1] at junit.framework.Assert.fail(Assert.java:50) at junit.framework.Assert.assertTrue(Assert.java:20) at org.apache.ctakes.regression.test.RegressionPipelineTest.compareXMLOutput(RegressionPipelineTest.java:148) at org.apache.ctakes.regression.test.RegressionPipelineTest$StatusCallbackListenerImpl.collectionProcessComplete(RegressionPipelineTest.java:201) at org.apache.uima.collection.impl.cpm.BaseCPMImpl.run(BaseCPMImpl.java:538) at java.lang.Thread.run(Thread.java:662) Results : Tests run: 0, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Apache cTAKES ..................................... SUCCESS [4.358s] [INFO] Apache cTAKES common type system .................. SUCCESS [9.796s] [INFO] Apache cTAKES utils ............................... SUCCESS [2.043s] [INFO] Apache cTAKES Resources core ...................... SUCCESS [0.738s] [INFO] Apache cTAKES core ................................ SUCCESS [7.492s] [INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [0.972s] [INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [3.259s] [INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [0.837s] [INFO] Apache cTAKES chunker ............................. SUCCESS [1.612s] [INFO] Apache cTAKES document preprocessor ............... SUCCESS [1.841s] [INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [0.870s] [INFO] Apache cTAKES dictionary lookup ................... SUCCESS [15.663s] [INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [1.004s] [INFO] Apache cTAKES Resources lvg ....................... SUCCESS [0.748s] [INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [1.725s] [INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [0.685s] [INFO] Apache cTAKES named entity contexts ............... SUCCESS [2.601s] [INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [1.026s] [INFO] Apache cTAKES Constituency Parser ................. SUCCESS [1.403s] [INFO] Apache cTAKES Resources coreference ............... SUCCESS [1.027s] [INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [0.695s] [INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [2.090s] [INFO] Apache cTAKES Dependency Parser ................... SUCCESS [27.228s] [INFO] Apache cTAKES Relation Extractor .................. SUCCESS [11.117s] [INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [3.551s] [INFO] Apache cTAKES Resources drug-ner .................. SUCCESS [0.886s] [INFO] Apache cTAKES Drug NER ............................ SUCCESS [4.427s] [INFO] Apache cTAKES Resources side-effect ............... SUCCESS [1.034s] [INFO] Apache cTAKES Side Effects ........................ SUCCESS [4.506s] [INFO] Apache cTAKES Resources smoking-status ............ SUCCESS [1.147s] [INFO] Apache cTAKES Smoking Status ...................... SUCCESS [3.856s] [INFO] Apache cTAKES Resources pad-term-spotter-res ...... SUCCESS [1.057s] [INFO] Apache cTAKES Pad Term Spotter .................... SUCCESS [4.567s] [INFO] Apache cTAKES Resources assertion ................. SUCCESS [1.791s] [INFO] Apache cTAKES Resources assertion-zoner ........... SUCCESS [1.199s] [INFO] Apache cTAKES Assertion's zoner ................... SUCCESS [1.803s] [INFO] Apache cTAKES Assertion ........................... SUCCESS [4.374s] [INFO] Apache cTAKES Resources temporal .................. SUCCESS [0.664s] [INFO] Apache cTAKES Temporal Information Extraction ..... SUCCESS [13.320s] [INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [2.628s] [INFO] Apache cTAKES Distribution ........................ SUCCESS [0.866s] [INFO] Apache cTAKES Regression-test ..................... FAILURE [15:02.533s] [INFO] Apache cTAKES template filler ..................... SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 17:38.272s [INFO] Finished at: Wed Jun 05 23:50:27 UTC 2013 [INFO] Final Memory: 37M/249M [INFO] ------------------------------------------------------------------------ [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled Waiting for Jenkins to finish collecting data mavenExecutionResult exceptions not empty message : Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12:test (default-test) on project ctakes-regression-test: Failure or timeout cause : Failure or timeout Stack trace : org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12:test (default-test) on project ctakes-regression-test: Failure or timeout at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:217) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:320) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239) at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:158) at hudson.maven.Maven3Builder.call(Maven3Builder.java:100) at hudson.maven.Maven3Builder.call(Maven3Builder.java:66) at hudson.remoting.UserRequest.perform(UserRequest.java:118) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:326) at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:72) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918) at java.lang.Thread.run(Thread.java:662) Caused by: org.apache.maven.plugin.MojoExecutionException: Failure or timeout at org.apache.maven.plugin.surefire.SurefirePlugin.assertNoFailureOrTimeout(SurefirePlugin.java:665) at org.apache.maven.plugin.surefire.SurefirePlugin.handleSummary(SurefirePlugin.java:646) at org.apache.maven.plugin.surefire.AbstractSurefireMojo.executeAfterPreconditionsChecked(AbstractSurefireMojo.java:137) at org.apache.maven.plugin.surefire.AbstractSurefireMojo.execute(AbstractSurefireMojo.java:98) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209) ... 27 more Sending e-mails to: [email protected] channel stopped
