See <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-regression-test/294/>
------------------------------------------ [...truncated 463 lines...] 13 Jun 2013 15:12:32 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 13 Jun 2013 15:12:32 INFO LvgAnnotator - process(JCas) 13 Jun 2013 15:12:32 INFO ContextDependentTokenizerAnnotator - process(JCas) 13 Jun 2013 15:12:32 INFO POSTagger - process(JCas) 13 Jun 2013 15:12:32 INFO Chunker - process(JCas) 13 Jun 2013 15:12:32 INFO CopyAnnotator - process(JCas) 13 Jun 2013 15:12:32 INFO OverlapAnnotator - process(JCas) 13 Jun 2013 15:12:32 INFO DictionaryLookupAnnotator - process(JCas) 13 Jun 2013 15:12:32 INFO MaxentParserWrapper - Started processing: sample_note_plaintext ....ended with 2 vectors. 13 Jun 2013 15:12:32 INFO MipacqSvmChainCreator - Classifying coreference in document: sample_note_plaintext 13 Jun 2013 15:12:33 INFO MipacqSvmChainCreator - Done classifying document: sample_note_plaintext 13 Jun 2013 15:12:33 INFO CasConsumer - Started 13 Jun 2013 15:12:33 INFO SentenceDetector - Starting processing. 13 Jun 2013 15:12:33 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 13 Jun 2013 15:12:33 INFO LvgAnnotator - process(JCas) 13 Jun 2013 15:12:33 INFO ContextDependentTokenizerAnnotator - process(JCas) 13 Jun 2013 15:12:33 INFO POSTagger - process(JCas) 13 Jun 2013 15:12:33 INFO Chunker - process(JCas) 13 Jun 2013 15:12:33 INFO CopyAnnotator - process(JCas) 13 Jun 2013 15:12:33 INFO OverlapAnnotator - process(JCas) 13 Jun 2013 15:12:33 INFO DictionaryLookupAnnotator - process(JCas) 13 Jun 2013 15:12:33 INFO MaxentParserWrapper - Started processing: testpatient_plaintext_1.txt ....ended with 4 vectors. 13 Jun 2013 15:12:33 INFO MipacqSvmChainCreator - Classifying coreference in document: testpatient_plaintext_1.txt 13 Jun 2013 15:12:33 INFO MipacqSvmChainCreator - Done classifying document: testpatient_plaintext_1.txt 13 Jun 2013 15:12:33 INFO CasConsumer - Started 13 Jun 2013 15:12:33 INFO SentenceDetector - Starting processing. 13 Jun 2013 15:12:33 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 13 Jun 2013 15:12:33 INFO LvgAnnotator - process(JCas) 13 Jun 2013 15:12:33 INFO ContextDependentTokenizerAnnotator - process(JCas) 13 Jun 2013 15:12:33 INFO POSTagger - process(JCas) 13 Jun 2013 15:12:33 INFO Chunker - process(JCas) 13 Jun 2013 15:12:33 INFO CopyAnnotator - process(JCas) 13 Jun 2013 15:12:33 INFO OverlapAnnotator - process(JCas) 13 Jun 2013 15:12:33 INFO DictionaryLookupAnnotator - process(JCas) 13 Jun 2013 15:12:33 INFO MaxentParserWrapper - Started processing: testpatient_plaintext_2.txt ....ended with 0 vectors. 13 Jun 2013 15:12:34 INFO MipacqSvmChainCreator - Classifying coreference in document: testpatient_plaintext_2.txt 13 Jun 2013 15:12:34 INFO MipacqSvmChainCreator - Done classifying document: testpatient_plaintext_2.txt 13 Jun 2013 15:12:34 INFO CasConsumer - Started 13 Jun 2013 15:12:34 INFO SentenceDetector - Starting processing. 13 Jun 2013 15:12:34 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 13 Jun 2013 15:12:34 INFO LvgAnnotator - process(JCas) 13 Jun 2013 15:12:34 INFO ContextDependentTokenizerAnnotator - process(JCas) 13 Jun 2013 15:12:34 INFO POSTagger - process(JCas) 13 Jun 2013 15:12:34 INFO Chunker - process(JCas) 13 Jun 2013 15:12:34 INFO CopyAnnotator - process(JCas) 13 Jun 2013 15:12:34 INFO OverlapAnnotator - process(JCas) 13 Jun 2013 15:12:34 INFO DictionaryLookupAnnotator - process(JCas) 13 Jun 2013 15:12:34 INFO MaxentParserWrapper - Started processing: doc2_07543210_sample_past_smoker.txt ....ended with 0 vectors. 13 Jun 2013 15:12:34 INFO MipacqSvmChainCreator - Classifying coreference in document: doc2_07543210_sample_past_smoker.txt 13 Jun 2013 15:12:34 INFO MipacqSvmChainCreator - Done classifying document: doc2_07543210_sample_past_smoker.txt 13 Jun 2013 15:12:34 INFO CasConsumer - Started 13 Jun 2013 15:12:34 INFO SentenceDetector - Starting processing. 13 Jun 2013 15:12:34 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 13 Jun 2013 15:12:34 INFO LvgAnnotator - process(JCas) 13 Jun 2013 15:12:35 INFO ContextDependentTokenizerAnnotator - process(JCas) 13 Jun 2013 15:12:35 INFO POSTagger - process(JCas) 13 Jun 2013 15:12:35 INFO Chunker - process(JCas) 13 Jun 2013 15:12:35 INFO CopyAnnotator - process(JCas) 13 Jun 2013 15:12:35 INFO OverlapAnnotator - process(JCas) 13 Jun 2013 15:12:35 INFO DictionaryLookupAnnotator - process(JCas) 13 Jun 2013 15:12:35 INFO MaxentParserWrapper - Started processing: testfakenote.txt ....ended with 5 vectors. 13 Jun 2013 15:12:35 INFO MipacqSvmChainCreator - Classifying coreference in document: testfakenote.txt 13 Jun 2013 15:12:36 INFO MipacqSvmChainCreator - Done classifying document: testfakenote.txt 13 Jun 2013 15:12:36 INFO CasConsumer - Started 13 Jun 2013 15:12:36 INFO SentenceDetector - Starting processing. 13 Jun 2013 15:12:36 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 13 Jun 2013 15:12:36 INFO LvgAnnotator - process(JCas) 13 Jun 2013 15:12:36 INFO ContextDependentTokenizerAnnotator - process(JCas) 13 Jun 2013 15:12:36 INFO POSTagger - process(JCas) 13 Jun 2013 15:12:36 INFO Chunker - process(JCas) 13 Jun 2013 15:12:36 INFO CopyAnnotator - process(JCas) 13 Jun 2013 15:12:36 INFO OverlapAnnotator - process(JCas) 13 Jun 2013 15:12:36 INFO DictionaryLookupAnnotator - process(JCas) 13 Jun 2013 15:12:36 INFO MaxentParserWrapper - Started processing: sample_note ....ended with 2 vectors. 13 Jun 2013 15:12:36 INFO MipacqSvmChainCreator - Classifying coreference in document: sample_note 13 Jun 2013 15:12:37 INFO MipacqSvmChainCreator - Done classifying document: sample_note 13 Jun 2013 15:12:37 INFO CasConsumer - Started 13 Jun 2013 15:12:37 INFO SentenceDetector - Starting processing. 13 Jun 2013 15:12:37 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 13 Jun 2013 15:12:37 INFO LvgAnnotator - process(JCas) 13 Jun 2013 15:12:37 INFO ContextDependentTokenizerAnnotator - process(JCas) 13 Jun 2013 15:12:37 INFO POSTagger - process(JCas) 13 Jun 2013 15:12:37 INFO Chunker - process(JCas) 13 Jun 2013 15:12:37 INFO CopyAnnotator - process(JCas) 13 Jun 2013 15:12:37 INFO OverlapAnnotator - process(JCas) 13 Jun 2013 15:12:37 INFO DictionaryLookupAnnotator - process(JCas) 13 Jun 2013 15:12:37 INFO MaxentParserWrapper - Started processing: doc1_07543210_sample_past_smoker.txt ....ended with 1 vectors. 13 Jun 2013 15:12:37 INFO MipacqSvmChainCreator - Classifying coreference in document: doc1_07543210_sample_past_smoker.txt 13 Jun 2013 15:12:38 INFO MipacqSvmChainCreator - Done classifying document: doc1_07543210_sample_past_smoker.txt 13 Jun 2013 15:12:38 INFO CasConsumer - Started 13 Jun 2013 15:12:38 INFO RegressionPipelineTest - Completed 12 documents 13 Jun 2013 15:12:38 INFO RegressionPipelineTest - Verifying Test Output: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-regression-test/ws/testdata/expectedoutput/CoreferenceCPETest/sample_note.xml> 13 Jun 2013 15:12:38 INFO RegressionPipelineTest - Verifying Test Output: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-regression-test/ws/testdata/expectedoutput/CoreferenceCPETest/doc2_07543210_sample_current.txt.xml> 13 Jun 2013 15:12:42 INFO RegressionPipelineTest - Verifying Test Output: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-regression-test/ws/testdata/expectedoutput/CoreferenceCPETest/testpatient_plaintext_2.txt.xml> 13 Jun 2013 15:12:42 INFO RegressionPipelineTest - Verifying Test Output: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-regression-test/ws/testdata/expectedoutput/CoreferenceCPETest/doc1_07543210_sample_current.txt.xml> 13 Jun 2013 15:12:42 INFO RegressionPipelineTest - Verifying Test Output: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-regression-test/ws/testdata/expectedoutput/CoreferenceCPETest/SampleInputRadiologyNotes.txt.xml> 13 Jun 2013 15:12:44 INFO RegressionPipelineTest - Verifying Test Output: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-regression-test/ws/testdata/expectedoutput/CoreferenceCPETest/doc1_07543210_sample_unknown.txt.xml> 13 Jun 2013 15:12:46 INFO RegressionPipelineTest - Verifying Test Output: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-regression-test/ws/testdata/expectedoutput/CoreferenceCPETest/doc2_07543210_sample_past_smoker.txt.xml> 13 Jun 2013 15:12:47 INFO RegressionPipelineTest - Verifying Test Output: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-regression-test/ws/testdata/expectedoutput/CoreferenceCPETest/text1.txt.xml> 13 Jun 2013 15:12:47 INFO RegressionPipelineTest - Verifying Test Output: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-regression-test/ws/testdata/expectedoutput/CoreferenceCPETest/doc1_07543210_sample_past_smoker.txt.xml> 13 Jun 2013 15:12:47 INFO RegressionPipelineTest - Verifying Test Output: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-regression-test/ws/testdata/expectedoutput/CoreferenceCPETest/sample_note_plaintext.xml> 13 Jun 2013 15:12:47 INFO RegressionPipelineTest - Verifying Test Output: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-regression-test/ws/testdata/expectedoutput/CoreferenceCPETest/testfakenote.txt.xml> 13 Jun 2013 15:12:47 INFO RegressionPipelineTest - Verifying Test Output: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-regression-test/ws/testdata/expectedoutput/CoreferenceCPETest/testpatient_plaintext_1.txt.xml> Exception in thread "BaseCPMImpl-Thread" junit.framework.AssertionFailedError: Verifying Test Output: testpatient_plaintext_1.txt.xmlorg.custommonkey.xmlunit.Diff [not identical] Expected attribute value '150' but was '235' - comparing <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation begin="150"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[1]/@begin to <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation begin="235"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[1]/@begin [not identical] Expected attribute value '156' but was '240' - comparing <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation end="156"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[1]/@end to <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation end="240"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[1]/@end [not identical] Expected attribute value '2' but was '7' - comparing <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation id="2"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[1]/@id to <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation id="7"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[1]/@id [not identical] Expected attribute value '248' but was '175' - comparing <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation begin="248"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[2]/@begin to <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation begin="175"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[2]/@begin [not identical] Expected attribute value '253' but was '180' - comparing <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation end="253"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[2]/@end to <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation end="180"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[2]/@end [not identical] Expected attribute value '8' but was '4' - comparing <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation id="8"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[2]/@id to <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation id="4"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[2]/@id [not identical] Expected attribute value '235' but was '150' - comparing <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation begin="235"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[3]/@begin to <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation begin="150"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[3]/@begin [not identical] Expected attribute value '240' but was '156' - comparing <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation end="240"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[3]/@end to <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation end="156"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[3]/@end [not identical] Expected attribute value '7' but was '2' - comparing <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation id="7"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[3]/@id to <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation id="2"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[3]/@id [not identical] Expected attribute value '175' but was '248' - comparing <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation begin="175"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[4]/@begin to <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation begin="248"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[4]/@begin [not identical] Expected attribute value '180' but was '253' - comparing <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation end="180"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[4]/@end to <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation end="253"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[4]/@end [not identical] Expected attribute value '4' but was '8' - comparing <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation id="4"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[4]/@id to <org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation id="8"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation[4]/@id [not identical] Expected attribute value '12458' but was '12493' - comparing <org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention _id="12458"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention[1]/@_id to <org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention _id="12493"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention[1]/@_id [not identical] Expected attribute value '12454' but was '12489' - comparing <org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention _ref_ontologyConceptArr="12454"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention[1]/@_ref_ontologyConceptArr to <org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention _ref_ontologyConceptArr="12489"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention[1]/@_ref_ontologyConceptArr [not identical] Expected sequence of child nodes '3865' but was '3867' - comparing <org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention[1] to <org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention[1] [not identical] Expected attribute value '12498' but was '12533' - comparing <org.apache.ctakes.typesystem.type.textsem.ProcedureMention _id="12498"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.ProcedureMention[1]/@_id to <org.apache.ctakes.typesystem.type.textsem.ProcedureMention _id="12533"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.ProcedureMention[1]/@_id [not identical] Expected attribute value '12495' but was '12530' - comparing <org.apache.ctakes.typesystem.type.textsem.ProcedureMention _ref_ontologyConceptArr="12495"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.ProcedureMention[1]/@_ref_ontologyConceptArr to <org.apache.ctakes.typesystem.type.textsem.ProcedureMention _ref_ontologyConceptArr="12530"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.ProcedureMention[1]/@_ref_ontologyConceptArr [not identical] Expected sequence of child nodes '3867' but was '3869' - comparing <org.apache.ctakes.typesystem.type.textsem.ProcedureMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.ProcedureMention[1] to <org.apache.ctakes.typesystem.type.textsem.ProcedureMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.ProcedureMention[1] [not identical] Expected attribute value '12535' but was '12570' - comparing <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention _id="12535"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.SignSymptomMention[1]/@_id to <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention _id="12570"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.SignSymptomMention[1]/@_id [not identical] Expected attribute value '12532' but was '12567' - comparing <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention _ref_ontologyConceptArr="12532"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.SignSymptomMention[1]/@_ref_ontologyConceptArr to <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention _ref_ontologyConceptArr="12567"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.SignSymptomMention[1]/@_ref_ontologyConceptArr [not identical] Expected sequence of child nodes '3869' but was '3871' - comparing <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.SignSymptomMention[1] to <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.SignSymptomMention[1] [not identical] Expected attribute value '12574' but was '12609' - comparing <org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention _id="12574"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention[1]/@_id to <org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention _id="12609"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention[1]/@_id [not identical] Expected attribute value '12571' but was '12606' - comparing <org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention _ref_ontologyConceptArr="12571"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention[1]/@_ref_ontologyConceptArr to <org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention _ref_ontologyConceptArr="12606"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention[1]/@_ref_ontologyConceptArr [not identical] Expected sequence of child nodes '3871' but was '3873' - comparing <org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention[1] to <org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention[1] [not identical] Expected attribute value '12602' but was '12448' - comparing <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention _id="12602"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MedicationEventMention[1]/@_id to <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention _id="12448"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MedicationEventMention[1]/@_id [not identical] Expected attribute value '12594' but was '12440' - comparing <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention _ref_ontologyConceptArr="12594"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MedicationEventMention[1]/@_ref_ontologyConceptArr to <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention _ref_ontologyConceptArr="12440"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MedicationEventMention[1]/@_ref_ontologyConceptArr [not identical] Expected sequence of child nodes '3873' but was '3865' - comparing <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MedicationEventMention[1] to <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MedicationEventMention[1] [not identical] Expected attribute value '12458' but was '12493' - comparing <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12458"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[1]/@_ref_content to <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12493"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[1]/@_ref_content [not identical] Expected attribute value '47' but was '37' - comparing <org.apache.ctakes.coreference.type.NEMarkable id="47"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[1]/@id to <org.apache.ctakes.coreference.type.NEMarkable id="37"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[1]/@id [not identical] Expected attribute value '12498' but was '12533' - comparing <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12498"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[2]/@_ref_content to <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12533"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[2]/@_ref_content [not identical] Expected attribute value '48' but was '38' - comparing <org.apache.ctakes.coreference.type.NEMarkable id="48"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[2]/@id to <org.apache.ctakes.coreference.type.NEMarkable id="38"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[2]/@id [not identical] Expected attribute value '12602' but was '12448' - comparing <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12602"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[3]/@_ref_content to <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12448"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[3]/@_ref_content [not identical] Expected attribute value '49' but was '39' - comparing <org.apache.ctakes.coreference.type.NEMarkable id="49"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[3]/@id to <org.apache.ctakes.coreference.type.NEMarkable id="39"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[3]/@id [not identical] Expected attribute value '12574' but was '12609' - comparing <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12574"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[4]/@_ref_content to <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12609"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[4]/@_ref_content [not identical] Expected attribute value '50' but was '40' - comparing <org.apache.ctakes.coreference.type.NEMarkable id="50"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[4]/@id to <org.apache.ctakes.coreference.type.NEMarkable id="40"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[4]/@id [not identical] Expected attribute value '12535' but was '12570' - comparing <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12535"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[5]/@_ref_content to <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12570"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[5]/@_ref_content [not identical] Expected attribute value '51' but was '41' - comparing <org.apache.ctakes.coreference.type.NEMarkable id="51"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[5]/@id to <org.apache.ctakes.coreference.type.NEMarkable id="41"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[5]/@id [not identical] Expected attribute value '12597' but was '12443' - comparing <org.apache.ctakes.typesystem.type.refsem.OntologyConcept _id="12597"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.OntologyConcept[1]/@_id to <org.apache.ctakes.typesystem.type.refsem.OntologyConcept _id="12443"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.OntologyConcept[1]/@_id [not identical] Expected sequence of child nodes '5047' but was '5065' - comparing <org.apache.ctakes.typesystem.type.refsem.OntologyConcept...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.OntologyConcept[1] to <org.apache.ctakes.typesystem.type.refsem.OntologyConcept...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.OntologyConcept[1] [not identical] Expected attribute value '12594' but was '12606' - comparing <uima.cas.FSArray _id="12594"...> at /CAS[1]/uima.cas.FSArray[147]/@_id to <uima.cas.FSArray _id="12606"...> at /CAS[1]/uima.cas.FSArray[147]/@_id [not identical] Expected text value '12597' but was '12599' - comparing <i ...>12597</i> at /CAS[1]/uima.cas.FSArray[147]/i[1]/text()[1] to <i ...>12599</i> at /CAS[1]/uima.cas.FSArray[147]/i[1]/text()[1] [not identical] Expected attribute value '12564' but was '12560' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="12564"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[1]/@_id to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="12560"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@_id [not identical] Expected attribute value '100002' but was '100206' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept code="100002"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[1]/@code to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept code="100206"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@code [not identical] Expected attribute value 'Cui0002' but was 'Cui0206' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept cui="Cui0002"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[1]/@cui to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept cui="Cui0206"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@cui [not identical] Expected attribute value '100002#SNOMED' but was '100206#SNOMED' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept oid="100002#SNOMED"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[1]/@oid to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept oid="100206#SNOMED"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@oid [not identical] Expected attribute value 'T_AS' but was 'T_SS' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept tui="T_AS"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[1]/@tui to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept tui="T_SS"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@tui [not identical] Expected attribute value '12571' but was '12567' - comparing <uima.cas.FSArray _id="12571"...> at /CAS[1]/uima.cas.FSArray[148]/@_id to <uima.cas.FSArray _id="12567"...> at /CAS[1]/uima.cas.FSArray[148]/@_id [not identical] Expected text value '12564' but was '12560' - comparing <i ...>12564</i> at /CAS[1]/uima.cas.FSArray[148]/i[1]/text()[1] to <i ...>12560</i> at /CAS[1]/uima.cas.FSArray[148]/i[1]/text()[1] [not identical] Expected attribute value '12525' but was '12523' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="12525"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@_id to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="12523"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@_id [not identical] Expected attribute value '100206' but was '100102' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept code="100206"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@code to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept code="100102"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@code [not identical] Expected attribute value 'Cui0206' but was 'Cui0102' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept cui="Cui0206"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@cui to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept cui="Cui0102"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@cui [not identical] Expected attribute value '100206#SNOMED' but was '100102#SNOMED' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept oid="100206#SNOMED"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@oid to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept oid="100102#SNOMED"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@oid [not identical] Expected attribute value 'T_SS' but was 'T_PR' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept tui="T_SS"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@tui to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept tui="T_PR"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@tui [not identical] Expected attribute value '12532' but was '12530' - comparing <uima.cas.FSArray _id="12532"...> at /CAS[1]/uima.cas.FSArray[149]/@_id to <uima.cas.FSArray _id="12530"...> at /CAS[1]/uima.cas.FSArray[149]/@_id [not identical] Expected text value '12525' but was '12523' - comparing <i ...>12525</i> at /CAS[1]/uima.cas.FSArray[149]/i[1]/text()[1] to <i ...>12523</i> at /CAS[1]/uima.cas.FSArray[149]/i[1]/text()[1] [not identical] Expected attribute value '12488' but was '12482' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="12488"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@_id to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="12482"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[4]/@_id [not identical] Expected attribute value '100102' but was '200309' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept code="100102"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@code to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept code="200309"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[4]/@code [not identical] Expected attribute value 'Cui0102' but was 'Cui0309' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept cui="Cui0102"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@cui to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept cui="Cui0309"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[4]/@cui [not identical] Expected attribute value '100102#SNOMED' but was '200309#SNOMED' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept oid="100102#SNOMED"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@oid to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept oid="200309#SNOMED"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[4]/@oid [not identical] Expected attribute value 'T_PR' but was 'T_DD' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept tui="T_PR"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@tui to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept tui="T_DD"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[4]/@tui [not identical] Expected attribute value '12495' but was '12489' - comparing <uima.cas.FSArray _id="12495"...> at /CAS[1]/uima.cas.FSArray[150]/@_id to <uima.cas.FSArray _id="12489"...> at /CAS[1]/uima.cas.FSArray[150]/@_id [not identical] Expected attribute value '1' but was '2' - comparing <uima.cas.FSArray size="1"...> at /CAS[1]/uima.cas.FSArray[150]/@size to <uima.cas.FSArray size="2"...> at /CAS[1]/uima.cas.FSArray[150]/@size [different] Expected number of child nodes '3' but was '5' - comparing <uima.cas.FSArray...> at /CAS[1]/uima.cas.FSArray[150] to <uima.cas.FSArray...> at /CAS[1]/uima.cas.FSArray[150] at junit.framework.Assert.fail(Assert.java:50) at junit.framework.Assert.assertTrue(Assert.java:20) at org.apache.ctakes.regression.test.RegressionPipelineTest.compareXMLOutput(RegressionPipelineTest.java:148) at org.apache.ctakes.regression.test.RegressionPipelineTest$StatusCallbackListenerImpl.collectionProcessComplete(RegressionPipelineTest.java:201) at org.apache.uima.collection.impl.cpm.BaseCPMImpl.run(BaseCPMImpl.java:538) at java.lang.Thread.run(Thread.java:662) Results : Tests run: 0, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results
