See <https://builds.apache.org/job/ctakes-trunk-package/168/changes>
Changes: [chenpei] CTAKES-223 - Thanks John Green for contributing the sample clinical notes. Added additional notes to the ctakes-examples project. ------------------------------------------ [...truncated 1758 lines...] INFO: --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-constituency-parser-res --- [INFO] No sources to compile Aug 24, 2013 11:46:47 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:46:47 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-constituency-parser-res --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-constituency-parser-res/src/test/resources> [INFO] Copying 3 resources Aug 24, 2013 11:46:47 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:46:47 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-constituency-parser-res --- [INFO] No sources to compile Aug 24, 2013 11:46:47 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:46:47 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-surefire-plugin:2.12:test (default-test) @ ctakes-constituency-parser-res --- [INFO] Tests are skipped. Aug 24, 2013 11:46:47 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:46:47 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-constituency-parser-res --- [INFO] Building jar: <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-constituency-parser-res/target/ctakes-constituency-parser-res-3.1.0-SNAPSHOT.jar> Aug 24, 2013 11:46:47 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:46:47 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-constituency-parser-res --- Aug 24, 2013 11:46:48 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:46:48 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-install-plugin:2.3.1:install (default-install) @ ctakes-constituency-parser-res --- [INFO] Installing <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-constituency-parser-res/target/ctakes-constituency-parser-res-3.1.0-SNAPSHOT.jar> to /home/jenkins/jenkins-slave/maven-repositories/1/org/apache/ctakes/ctakes-constituency-parser-res/3.1.0-SNAPSHOT/ctakes-constituency-parser-res-3.1.0-SNAPSHOT.jar [INFO] Installing <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-constituency-parser-res/pom.xml> to /home/jenkins/jenkins-slave/maven-repositories/1/org/apache/ctakes/ctakes-constituency-parser-res/3.1.0-SNAPSHOT/ctakes-constituency-parser-res-3.1.0-SNAPSHOT.pom Aug 24, 2013 11:46:53 AM org.apache.maven.cli.event.ExecutionEventLogger projectStarted INFO: Aug 24, 2013 11:46:53 AM org.apache.maven.cli.event.ExecutionEventLogger projectStarted INFO: ------------------------------------------------------------------------ Aug 24, 2013 11:46:53 AM org.apache.maven.cli.event.ExecutionEventLogger projectStarted INFO: Building Apache cTAKES Constituency Parser 3.1.0-SNAPSHOT Aug 24, 2013 11:46:53 AM org.apache.maven.cli.event.ExecutionEventLogger projectStarted INFO: ------------------------------------------------------------------------ Aug 24, 2013 11:46:53 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:46:53 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-constituency-parser --- [INFO] Deleting <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-constituency-parser/target> Aug 24, 2013 11:46:53 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:46:53 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-constituency-parser --- Downloading: http://repo.maven.apache.org/maven2/jwnl/jwnl/1.3.3/jwnl-1.3.3.pom Aug 24, 2013 11:46:53 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:46:53 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-constituency-parser --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] Copying 3 resources Aug 24, 2013 11:46:54 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:46:54 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- jcasgen-maven-plugin:0.9.3:generate (default) @ ctakes-constituency-parser --- [INFO] JCasGen: Output going to '<https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-constituency-parser/target/generated-sources/jcasgen'> [INFO] JCasGen: Reading the XML TAE descriptor, and creating types, for xml input file '<https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-constituency-parser/src/main/resources/org/apache/ctakes/constituency/parser/types/LabeledTree.xml'.> [INFO] JCasGen: Creating: 'org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree'. [INFO] JCasGen: Creating: 'org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree_Type'. Aug 24, 2013 11:46:54 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:46:54 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-constituency-parser --- [INFO] Compiling 12 source files to <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-constituency-parser/target/classes> [WARNING] <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-constituency-parser/src/main/java/org/apache/ctakes/constituency/parser/ae/ConstituencyParser.java>:[52,47] [deprecation] locateFile(java.lang.String) in org.apache.ctakes.core.resource.FileLocator has been deprecated Aug 24, 2013 11:46:54 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:46:54 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-constituency-parser --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-constituency-parser/src/test/resources> [INFO] Copying 3 resources Aug 24, 2013 11:46:54 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:46:54 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-constituency-parser --- [INFO] No sources to compile Aug 24, 2013 11:46:54 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:46:54 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-surefire-plugin:2.12:test (default-test) @ ctakes-constituency-parser --- [INFO] Tests are skipped. Aug 24, 2013 11:46:54 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:46:54 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-constituency-parser --- [INFO] Building jar: <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-constituency-parser/target/ctakes-constituency-parser-3.1.0-SNAPSHOT.jar> Aug 24, 2013 11:46:54 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:46:54 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-constituency-parser --- Aug 24, 2013 11:46:55 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:46:55 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-install-plugin:2.3.1:install (default-install) @ ctakes-constituency-parser --- [INFO] Installing <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-constituency-parser/target/ctakes-constituency-parser-3.1.0-SNAPSHOT.jar> to /home/jenkins/jenkins-slave/maven-repositories/1/org/apache/ctakes/ctakes-constituency-parser/3.1.0-SNAPSHOT/ctakes-constituency-parser-3.1.0-SNAPSHOT.jar [INFO] Installing <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-constituency-parser/pom.xml> to /home/jenkins/jenkins-slave/maven-repositories/1/org/apache/ctakes/ctakes-constituency-parser/3.1.0-SNAPSHOT/ctakes-constituency-parser-3.1.0-SNAPSHOT.pom Aug 24, 2013 11:46:57 AM org.apache.maven.cli.event.ExecutionEventLogger projectStarted INFO: Aug 24, 2013 11:46:57 AM org.apache.maven.cli.event.ExecutionEventLogger projectStarted INFO: ------------------------------------------------------------------------ Aug 24, 2013 11:46:57 AM org.apache.maven.cli.event.ExecutionEventLogger projectStarted INFO: Building Apache cTAKES Resources coreference 3.1.0-SNAPSHOT Aug 24, 2013 11:46:57 AM org.apache.maven.cli.event.ExecutionEventLogger projectStarted INFO: ------------------------------------------------------------------------ Aug 24, 2013 11:46:57 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:46:57 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-coreference-res --- [INFO] Deleting <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-coreference-res/target> Aug 24, 2013 11:46:57 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:46:57 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-coreference-res --- Aug 24, 2013 11:46:57 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:46:57 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-coreference-res --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 30 resources [INFO] Copying 3 resources Aug 24, 2013 11:46:57 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:46:57 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-coreference-res --- [INFO] No sources to compile Aug 24, 2013 11:46:58 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:46:58 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-coreference-res --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-coreference-res/src/test/resources> [INFO] Copying 3 resources Aug 24, 2013 11:46:58 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:46:58 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-coreference-res --- [INFO] No sources to compile Aug 24, 2013 11:46:58 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:46:58 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-surefire-plugin:2.12:test (default-test) @ ctakes-coreference-res --- [INFO] Tests are skipped. Aug 24, 2013 11:46:58 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:46:58 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-coreference-res --- [INFO] Building jar: <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-coreference-res/target/ctakes-coreference-res-3.1.0-SNAPSHOT.jar> Aug 24, 2013 11:46:58 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:46:58 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-coreference-res --- Aug 24, 2013 11:46:58 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:46:58 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-install-plugin:2.3.1:install (default-install) @ ctakes-coreference-res --- [INFO] Installing <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-coreference-res/target/ctakes-coreference-res-3.1.0-SNAPSHOT.jar> to /home/jenkins/jenkins-slave/maven-repositories/1/org/apache/ctakes/ctakes-coreference-res/3.1.0-SNAPSHOT/ctakes-coreference-res-3.1.0-SNAPSHOT.jar [INFO] Installing <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-coreference-res/pom.xml> to /home/jenkins/jenkins-slave/maven-repositories/1/org/apache/ctakes/ctakes-coreference-res/3.1.0-SNAPSHOT/ctakes-coreference-res-3.1.0-SNAPSHOT.pom Aug 24, 2013 11:47:01 AM org.apache.maven.cli.event.ExecutionEventLogger projectStarted INFO: Aug 24, 2013 11:47:01 AM org.apache.maven.cli.event.ExecutionEventLogger projectStarted INFO: ------------------------------------------------------------------------ Aug 24, 2013 11:47:01 AM org.apache.maven.cli.event.ExecutionEventLogger projectStarted INFO: Building Apache cTAKES Resources relation-extractor 3.1.0-SNAPSHOT Aug 24, 2013 11:47:01 AM org.apache.maven.cli.event.ExecutionEventLogger projectStarted INFO: ------------------------------------------------------------------------ Aug 24, 2013 11:47:01 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:47:01 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-relation-extractor-res --- [INFO] Deleting <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-relation-extractor-res/target> Aug 24, 2013 11:47:01 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:47:01 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-relation-extractor-res --- Aug 24, 2013 11:47:01 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:47:01 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-relation-extractor-res --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 4 resources [INFO] Copying 3 resources Aug 24, 2013 11:47:02 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:47:02 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-relation-extractor-res --- [INFO] No sources to compile Aug 24, 2013 11:47:02 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:47:02 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-relation-extractor-res --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-relation-extractor-res/src/test/resources> [INFO] Copying 3 resources Aug 24, 2013 11:47:02 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:47:02 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-relation-extractor-res --- [INFO] No sources to compile Aug 24, 2013 11:47:02 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:47:02 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-surefire-plugin:2.12:test (default-test) @ ctakes-relation-extractor-res --- [INFO] Tests are skipped. Aug 24, 2013 11:47:02 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:47:02 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-relation-extractor-res --- [INFO] Building jar: <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-relation-extractor-res/target/ctakes-relation-extractor-res-3.1.0-SNAPSHOT.jar> Aug 24, 2013 11:47:02 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:47:02 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-relation-extractor-res --- Aug 24, 2013 11:47:02 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:47:02 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-install-plugin:2.3.1:install (default-install) @ ctakes-relation-extractor-res --- [INFO] Installing <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-relation-extractor-res/target/ctakes-relation-extractor-res-3.1.0-SNAPSHOT.jar> to /home/jenkins/jenkins-slave/maven-repositories/1/org/apache/ctakes/ctakes-relation-extractor-res/3.1.0-SNAPSHOT/ctakes-relation-extractor-res-3.1.0-SNAPSHOT.jar [INFO] Installing <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-relation-extractor-res/pom.xml> to /home/jenkins/jenkins-slave/maven-repositories/1/org/apache/ctakes/ctakes-relation-extractor-res/3.1.0-SNAPSHOT/ctakes-relation-extractor-res-3.1.0-SNAPSHOT.pom Aug 24, 2013 11:47:04 AM org.apache.maven.cli.event.ExecutionEventLogger projectStarted INFO: Aug 24, 2013 11:47:04 AM org.apache.maven.cli.event.ExecutionEventLogger projectStarted INFO: ------------------------------------------------------------------------ Aug 24, 2013 11:47:04 AM org.apache.maven.cli.event.ExecutionEventLogger projectStarted INFO: Building Apache cTAKES Resources dependency-parser 3.1.0-SNAPSHOT Aug 24, 2013 11:47:04 AM org.apache.maven.cli.event.ExecutionEventLogger projectStarted INFO: ------------------------------------------------------------------------ Aug 24, 2013 11:47:04 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 24, 2013 11:47:04 AM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-dependency-parser-res --- [INFO] Deleting <https://builds.apache.org/job/ctakes-trunk-package/ws/ctakes-dependency-parser-res/target> ERROR: Maven JVM terminated unexpectedly with exit code 143
