See <https://builds.apache.org/job/ctakes-trunk-compiletest/418/changes>
Changes: [chenpei] CTAKES-243 Delete multiple copies of SentenceDetectorAnnotator.xml Update any aggregates to use ../../ctakes-core/desc/analysis_engine/SenteceDetectorAnnotator.xml instead just like the rest of the desc. [chenpei] CTAKES-243 Delete multiple copies of SentenceDetectorAnnotator.xml ------------------------------------------ [...truncated 4814 lines...] [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.TopTreebankNode_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.TreebankNode'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.TreebankNode_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.UCP'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.UCP_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.VP'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.VP_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.WordToken'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.syntax.WordToken_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.temporary.assertion.AssertionCuePhraseAnnotation_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.BodyLateralityModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.BodyLateralityModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.BodySideModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.BodySideModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ConditionalModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ConditionalModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ContextAnnotation'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ContextAnnotation_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.CourseModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.CourseModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.DateAnnotation'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.DateAnnotation_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.DiseaseDisorderMention_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.EntityMention'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.EntityMention_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.EventMention'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.EventMention_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.FractionAnnotation'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.FractionAnnotation_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.GenericModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.GenericModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.HistoryOfModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.HistoryOfModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabDeltaFlagModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabDeltaFlagModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabEstimatedModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabInterpretationModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabMention'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabMention_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabReferenceRangeModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabReferenceRangeModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabValueModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.LabValueModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MeasurementAnnotation_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationAllergyModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationDosageModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationDosageModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationDurationModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationDurationModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationEventMention'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationEventMention_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationFormModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationFormModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationFrequencyModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationFrequencyModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationMention'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationMention_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationRouteModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationRouteModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationStatusChangeModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationStatusChangeModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationStrengthModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.MedicationStrengthModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Modifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Modifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.PersonTitleAnnotation_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.PolarityModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.PolarityModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Predicate'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.Predicate_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureDeviceModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMention'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMention_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RangeAnnotation'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RangeAnnotation_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticArgument'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticArgument_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SeverityModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SeverityModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SignSymptomMention'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SubjectModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SubjectModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeAnnotation'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeAnnotation_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeMention'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeMention_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.List'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.List_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Paragraph'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Paragraph_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Segment'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Segment_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Sentence'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Sentence_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pair'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pair_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pairs'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pairs_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.ProbabilityDistribution'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.ProbabilityDistribution_Type'. Sep 11, 2013 3:31:49 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Sep 11, 2013 3:31:49 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-side-effect --- [INFO] Compiling 292 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-side-effect/target/classes> Sep 11, 2013 3:31:50 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Sep 11, 2013 3:31:50 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-side-effect --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-side-effect/src/test/resources> [INFO] Copying 3 resources [INFO] Copying 3 resources Sep 11, 2013 3:31:50 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Sep 11, 2013 3:31:50 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-side-effect --- [INFO] No sources to compile Sep 11, 2013 3:31:50 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Sep 11, 2013 3:31:50 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-surefire-plugin:2.12:test (default-test) @ ctakes-side-effect --- [INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-side-effect/target/surefire-reports> ------------------------------------------------------- T E S T S ------------------------------------------------------- Results : Tests run: 0, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results Sep 11, 2013 3:31:53 PM org.apache.maven.cli.event.ExecutionEventLogger projectStarted INFO: Sep 11, 2013 3:31:53 PM org.apache.maven.cli.event.ExecutionEventLogger projectStarted INFO: ------------------------------------------------------------------------ Sep 11, 2013 3:31:53 PM org.apache.maven.cli.event.ExecutionEventLogger projectStarted INFO: Building Apache cTAKES Resources smoking-status 3.2.0-SNAPSHOT Sep 11, 2013 3:31:53 PM org.apache.maven.cli.event.ExecutionEventLogger projectStarted INFO: ------------------------------------------------------------------------ Sep 11, 2013 3:31:53 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Sep 11, 2013 3:31:53 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-smoking-status-res --- [INFO] Deleting <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-smoking-status-res/target> Sep 11, 2013 3:31:53 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Sep 11, 2013 3:31:53 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-smoking-status-res --- Sep 11, 2013 3:31:54 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Sep 11, 2013 3:31:54 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-smoking-status-res --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 17 resources [INFO] Copying 3 resources Sep 11, 2013 3:31:54 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Sep 11, 2013 3:31:54 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-smoking-status-res --- [INFO] No sources to compile Sep 11, 2013 3:31:54 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Sep 11, 2013 3:31:54 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-smoking-status-res --- Sep 11, 2013 3:31:54 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Sep 11, 2013 3:31:54 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-smoking-status-res --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 17 resources [INFO] Copying 3 resources [INFO] Copying 3 resources Sep 11, 2013 3:31:54 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Sep 11, 2013 3:31:54 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-smoking-status-res --- [INFO] No sources to compile Sep 11, 2013 3:31:54 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Sep 11, 2013 3:31:54 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-smoking-status-res --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-smoking-status-res/src/test/resources> [INFO] Copying 3 resources [INFO] Copying 3 resources Sep 11, 2013 3:31:54 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Sep 11, 2013 3:31:54 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-smoking-status-res --- [INFO] No sources to compile Sep 11, 2013 3:31:54 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Sep 11, 2013 3:31:54 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-surefire-plugin:2.12:test (default-test) @ ctakes-smoking-status-res --- [INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-smoking-status-res/target/surefire-reports> ------------------------------------------------------- T E S T S ------------------------------------------------------- Results : Tests run: 0, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results Sep 11, 2013 3:32:04 PM org.apache.maven.cli.event.ExecutionEventLogger projectStarted INFO: Sep 11, 2013 3:32:04 PM org.apache.maven.cli.event.ExecutionEventLogger projectStarted INFO: ------------------------------------------------------------------------ Sep 11, 2013 3:32:04 PM org.apache.maven.cli.event.ExecutionEventLogger projectStarted INFO: Building Apache cTAKES Smoking Status 3.2.0-SNAPSHOT Sep 11, 2013 3:32:04 PM org.apache.maven.cli.event.ExecutionEventLogger projectStarted INFO: ------------------------------------------------------------------------ Sep 11, 2013 3:32:04 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Sep 11, 2013 3:32:04 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-smoking-status --- [INFO] Deleting <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-smoking-status/target> ERROR: Maven JVM terminated unexpectedly with exit code 143
