See <https://builds.apache.org/job/ctakes-trunk-package/221/changes>
Changes: [tmill] Fixed bug in dictionary lookup introduced by Java 7 changes. [vjapache] #CTAKES-253, CTAKES-292 ytex merge [vjapache] #CTAKES-253, CTAKES-292 ytex merge [vjapache] #CTAKES-253, CTAKES-292 ytex merge [tmill] Fixed reference to non-official model, and switched lvg to not post lemmas. [tmill] CTAKES-297: First pass at some default pipelines. Full dictionary pipeline still WIP but basics are set up. [tmill] CTAKES-197: Update Dictionary module to java 7 (and java 5 and 6 while I was at it). [tmill] CTAKES-297: Standardized Lvg static factory method by catching URI exception. [tmill] CTAKES-297: Added method for getting default descriptor & model-specifying descriptor for ChunkAdjuster. [tmill] CTAKES-297: Added method for getting default descriptor & model-specifying descriptor for Chunker. [tmill] CTAKES-297: Added method for getting default descriptor & model-specifying descriptor for POSTagger. [tmill] CTAKES-297: Added method for getting default descriptor for ContextDependentTokenizerAnnotator. [tmill] CTAKES-297: Added method for getting descriptor for LvgAnnotator. Added unit test. Made some parameters optional with sane defaults. [tmill] CTAKES-297: Added method for getting descriptor for TokenizerAnnotatorPTB [tmill] CTAKES-16: Fix TokenizerAnnotatorPTB to use UIMAFit select instead of iterator. [tmill] CTAKES-297: Added methods for getting descriptors for SentenceDetector. [tmill] CTAKES-297: Added methods for getting descriptors for SimpleSegmentAnnotator. [tmill] CTAKES-16: Fix to use UIMAFit select instead of iterator. [dligach] added note name to the output [chenpei] CTAKES-286 - Remove no longer used pad term spotter and related resources. Full Thread here: http://mail-archives.apache.org/mod_mbox/ctakes-dev/201402.mbox/%3C924DE05C19409B438EB81DE683A942D91066CE4B%40CHEXMBX1A.CHBOSTON.ORG%3E [chenpei] CTAKES-294 Wrong PROJECT_ATTR in ctakes-core/resources/launch/UIMA_CVD--core.launch Thanks iglewski for identifying the issue. [dligach] got rid of the loop and replaced it with an iterator [dligach] now using cumulative probability as a feature [tmill] CTAKES-295: Update CopyAnnotator to use UimaFit-style configuration. [tmill] CTAKES-295: Update ChunkAdjuster to use UimaFit-style configuration parameters. [tmill] CTAKES-197: Used java 7 style generics w/o unnecessary type specifications to remove warnings. [tmill] Minor cleanup -- added comment to undocumented empty method. [tmill] CTAKES-295: Updated to use uima-fit configuration parameters. [tmill] CTAKES-295: Update pos tagger to use uimafit configuratino parameters, some other minor java 7 updates. [tmill] CTAKES-295: Update ContextDependentTokenizerAnnotator to UIMAFit-style methods and Java >=6 overrides. [tmill] CTAKES-295: Update LVG to use UIMAFit style configuration parameters and resources -- changes some arguments to being optional with sane default values. [dligach] added event-time relations where arg1=event and arg2=time [clin] fix a typo in CheckSpecialWordRelatinExtractor, which is used for event-time relation discovery. [clin] added three more feature extractors for event-time relation discovery. [dligach] added event-time relations [dligach] Added a class to display duration information for event arguments of event-event relations. Did some refactoring for EventTimeDurationStatistics related to this. [dligach] output durations in days (instead of normalized seconds) [clin] fix a dependency error. added dependency distance as a feature [clin] add transitive closure for event-time relation discovery. Closure was added for both training and testing, and both gold relations and system predictions. [dligach] only print contexts of up to 80 characters [tmill] CTAKES-197: Java 7 updates (mainly type/generic stuff, some try-with-resources) to LVG Annotator. [dligach] now including relation context too [tmill] Fixed order of annotators in TokensAndSentencesTAE descriptor. [dligach] dump duration of event and time arguments of time-event relations to a file [tmill] CTAKES-295: Updated TokenizerAnnotatorPTB to use UIMAFit configuration. [tmill] CTAKES-295: Updated CDA segmenter to use uimafit configurations. [tmill] CTAKES-197: Updates for java 7 to remove warnings. [tmill] CTAKES-295: Updates SentenceDetector to use UimaFit-style configuration. [tmill] CTAKES-70: Adds unit test for sentence detector. ------------------------------------------ [...truncated 3342 lines...] A ctakes-ytex/README A ctakes-ytex/.settings A ctakes-ytex/.settings/org.eclipse.jdt.core.prefs A ctakes-ytex/.settings/org.eclipse.m2e.core.prefs A ctakes-ytex/.settings/org.eclipse.core.resources.prefs A ctakes-ytex/.classpath A ctakes-ytex/LICENSE A ctakes-ytex/.project A ctakes-assertion-zoner-res A ctakes-assertion-zoner-res/src A ctakes-assertion-zoner-res/src/test A ctakes-assertion-zoner-res/src/main A ctakes-assertion-zoner-res/src/main/resources A ctakes-assertion-zoner-res/src/main/resources/META-INF A ctakes-assertion-zoner-res/src/main/resources/META-INF/org.uimafit A ctakes-assertion-zoner-res/src/main/resources/META-INF/org.uimafit/types.txt A ctakes-assertion-zoner-res/src/main/resources/org A ctakes-assertion-zoner-res/src/main/resources/org/mitre A ctakes-assertion-zoner-res/src/main/resources/org/mitre/medfacts A ctakes-assertion-zoner-res/src/main/resources/org/mitre/medfacts/uima A ctakes-assertion-zoner-res/src/main/resources/org/mitre/medfacts/uima/section_regex.xml.bak A ctakes-assertion-zoner-res/src/main/resources/org/mitre/medfacts/uima/mayo_sections.xml A ctakes-assertion-zoner-res/src/main/resources/org/mitre/medfacts/uima/section_regex.04162012.xml A ctakes-assertion-zoner-res/src/main/resources/org/mitre/medfacts/uima/section_regex.xml.bak2 A ctakes-assertion-zoner-res/src/main/resources/org/mitre/medfacts/uima/section_regex.06162011.xml A ctakes-assertion-zoner-res/src/main/resources/org/mitre/medfacts/uima/section_regex.xml A ctakes-assertion-zoner-res/src/main/resources/org/mitre/medfacts/uima/section_regex.out.xml A ctakes-assertion-zoner-res/pom.xml A ctakes-assertion-zoner-res/.settings A ctakes-assertion-zoner-res/.settings/org.eclipse.ltk.core.refactoring.prefs A ctakes-assertion-zoner-res/.settings/org.eclipse.jdt.core.prefs A ctakes-assertion-zoner-res/.settings/org.eclipse.m2e.core.prefs A ctakes-assertion-zoner-res/.settings/org.eclipse.core.resources.prefs AU ctakes-assertion-zoner-res/.classpath A ctakes-assertion-zoner-res/LICENSE A ctakes-assertion-zoner-res/.project A ctakes-regression-test AU ctakes-regression-test/.classpath A ctakes-regression-test/.project A ctakes-regression-test/src A ctakes-regression-test/src/test A ctakes-regression-test/src/test/java A ctakes-regression-test/src/test/java/org A ctakes-regression-test/src/test/java/org/apache A ctakes-regression-test/src/test/java/org/apache/ctakes A ctakes-regression-test/src/test/java/org/apache/ctakes/regression A ctakes-regression-test/src/test/java/org/apache/ctakes/regression/test A ctakes-regression-test/src/test/java/org/apache/ctakes/regression/test/RegressionPipelineTest.java A ctakes-regression-test/src/test/resources A ctakes-regression-test/src/main A ctakes-regression-test/src/main/java A ctakes-regression-test/src/main/resources A ctakes-regression-test/testdata A ctakes-regression-test/testdata/generatedoutput A ctakes-regression-test/testdata/input A ctakes-regression-test/testdata/input/plaintext AU ctakes-regression-test/testdata/input/plaintext/edge_cases_plaintext_1.txt A ctakes-regression-test/testdata/input/plaintext/doc1_07543210_sample_unknown.txt A ctakes-regression-test/testdata/input/plaintext/testfakenote.txt A ctakes-regression-test/testdata/input/plaintext/testpatient_plaintext_1.txt A ctakes-regression-test/testdata/input/plaintext/testpatient_plaintext_2.txt A ctakes-regression-test/testdata/input/plaintext/doc1_07543210_sample_current.txt A ctakes-regression-test/testdata/input/plaintext/doc2_07543210_sample_current.txt A ctakes-regression-test/testdata/input/plaintext/sample_note_plaintext A ctakes-regression-test/testdata/input/plaintext/doc1_07543210_sample_past_smoker.txt A ctakes-regression-test/testdata/input/plaintext/SampleInputRadiologyNotes.txt A ctakes-regression-test/testdata/input/plaintext/doc2_07543210_sample_past_smoker.txt A ctakes-regression-test/testdata/input/plaintext/text1.txt A ctakes-regression-test/testdata/input/plaintext/sample_note A ctakes-regression-test/testdata/input/cda A ctakes-regression-test/testdata/input/cda/testpatient_cn_2.xml A ctakes-regression-test/testdata/input/cda/testpatient_cn_1.xml A ctakes-regression-test/testdata/expectedoutput A ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest A ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/SampleInputRadiologyNotes.txt.xml A ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/doc2_07543210_sample_past_smoker.txt.xml A ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/text1.txt.xml A ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/sample_note.xml AU ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/edge_cases_plaintext_1.txt.xml A ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/doc1_07543210_sample_unknown.txt.xml A ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/testfakenote.txt.xml A ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/testpatient_plaintext_1.txt.xml A ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/testpatient_plaintext_2.txt.xml A ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/doc1_07543210_sample_current.txt.xml A ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/doc2_07543210_sample_current.txt.xml A ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/sample_note_plaintext.xml A ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/doc1_07543210_sample_past_smoker.txt.xml A ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest A ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/text1.txt.xml A ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/sample_note.xml A ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/doc1_07543210_sample_unknown.txt.xml A ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/testfakenote.txt.xml A ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/testpatient_plaintext_1.txt.xml A ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/testpatient_plaintext_2.txt.xml A ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/doc1_07543210_sample_current.txt.xml A ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/doc2_07543210_sample_current.txt.xml A ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/sample_note_plaintext.xml A ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/doc1_07543210_sample_past_smoker.txt.xml A ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/SampleInputRadiologyNotes.txt.xml A ctakes-regression-test/testdata/expectedoutput/POSTaggerCPETest/doc2_07543210_sample_past_smoker.txt.xml A ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest A ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/SampleInputRadiologyNotes.txt.xml A ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/doc2_07543210_sample_past_smoker.txt.xml A ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/text1.txt.xml A ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/sample_note.xml A ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/doc1_07543210_sample_unknown.txt.xml A ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/testfakenote.txt.xml A ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/testpatient_plaintext_1.txt.xml A ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/testpatient_plaintext_2.txt.xml A ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/doc1_07543210_sample_current.txt.xml A ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/doc2_07543210_sample_current.txt.xml A ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/sample_note_plaintext.xml A ctakes-regression-test/testdata/expectedoutput/CoreferenceCPETest/doc1_07543210_sample_past_smoker.txt.xml A ctakes-regression-test/pom.xml A ctakes-regression-test/.settings A ctakes-regression-test/.settings/org.eclipse.jdt.core.prefs A ctakes-regression-test/.settings/org.eclipse.m2e.core.prefs A ctakes-regression-test/.settings/org.eclipse.core.resources.prefs A ctakes-regression-test/desc A ctakes-regression-test/desc/analysis_engine A ctakes-regression-test/desc/analysis_engine/RegressionPipelineAggregateTest.xml A ctakes-regression-test/desc/collection_processing_engine A ctakes-regression-test/desc/collection_processing_engine/RegressionPipelineCPETest.xml A ctakes-assertion-res A ctakes-assertion-res/.settings A ctakes-assertion-res/.settings/org.eclipse.jdt.core.prefs A ctakes-assertion-res/.settings/org.eclipse.m2e.core.prefs A ctakes-assertion-res/.settings/org.eclipse.core.resources.prefs A ctakes-assertion-res/.settings/org.eclipse.ltk.core.refactoring.prefs AU ctakes-assertion-res/.classpath A ctakes-assertion-res/LICENSE A ctakes-assertion-res/.project A ctakes-assertion-res/src A ctakes-assertion-res/src/test A ctakes-assertion-res/src/main A ctakes-assertion-res/src/main/resources A ctakes-assertion-res/src/main/resources/org A ctakes-assertion-res/src/main/resources/org/apache A ctakes-assertion-res/src/main/resources/org/apache/ctakes A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/scope.model A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/generic.txt AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/cue.model AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/i2b2.model A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/featureFile11b A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/history.txt AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/pos.model A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/polarity.txt AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/sharpPolarityFrags.txt A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/uncertainty.txt AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/sharpUncertaintyFrags.txt A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/all_cues.txt A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/cue_words.txt A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/cue_words A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/cue_words/conditional.psv A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/cue_words/negation_cue_class.psv A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/cue_words/speculation.psv A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/cue_words/not_patient_cue_list.psv A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/cue_words/hypothetical.psv A ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/evidence.txt AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/continue.txt AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/hypothetical_cue_list.txt AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/change_state.txt AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/stop.txt AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/experience.txt AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/exception.txt AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/allergy.txt AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/deny.txt AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/cause.txt AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/history.txt AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/avoid.txt AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/certainty.txt AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/decline.txt AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/instance.txt AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/uncertainty.txt AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/copular.txt AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/disappear.txt AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/fail.txt AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/association.txt AU ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/semantic_classes/def_determiner.txt A ctakes-assertion-res/pom.xml A ctakes-pos-tagger-res A ctakes-pos-tagger-res/src A ctakes-pos-tagger-res/src/main A ctakes-pos-tagger-res/src/main/resources A ctakes-pos-tagger-res/src/main/resources/org A ctakes-pos-tagger-res/src/main/resources/org/apache A ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes A ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger A ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models A ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/README A ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/clearnlp AU ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/clearnlp/mayo-en-pos-1.3.0.jar AU ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/mayo-pos.zip A ctakes-pos-tagger-res/src/test A ctakes-pos-tagger-res/pom.xml A ctakes-pos-tagger-res/.settings A ctakes-pos-tagger-res/.settings/org.eclipse.ltk.core.refactoring.prefs A ctakes-pos-tagger-res/.settings/org.eclipse.jdt.core.prefs A ctakes-pos-tagger-res/.settings/org.eclipse.m2e.core.prefs A ctakes-pos-tagger-res/.settings/org.eclipse.core.resources.prefs AU ctakes-pos-tagger-res/.classpath A ctakes-pos-tagger-res/LICENSE A ctakes-pos-tagger-res/.project U . At revision 1590699 Parsing POMs Discovered a new module org.apache.ctakes:ctakes-ytex-res Apache cTAKES Resources ctakes-ytex-res Discovered a new module org.apache.ctakes:ctakes-ytex Apache cTAKES YTEX Discovered a new module org.apache.ctakes:ctakes-ytex-uima Apache cTAKES YTEX UIMA Discovered a new module org.apache.ctakes:ctakes-ytex-web Apache cTAKES YTEX Web Modules changed, recalculating dependency graph maven3-agent.jar already up to date maven3-interceptor.jar already up to date maven3-interceptor-commons.jar already up to date [ctakes-trunk-package] $ /home/hudson/tools/java/latest1.7/bin/java -cp /home/jenkins/jenkins-slave/maven3-agent.jar:/home/hudson/tools/maven/apache-maven-3.0.4/boot/plexus-classworlds-2.4.jar org.jvnet.hudson.maven3.agent.Maven3Main /home/hudson/tools/maven/apache-maven-3.0.4 /home/jenkins/jenkins-slave/slave.jar /home/jenkins/jenkins-slave/maven3-interceptor.jar /home/jenkins/jenkins-slave/maven3-interceptor-commons.jar 46666 <===[JENKINS REMOTING CAPACITY]===>channel started log4j:WARN No appenders could be found for logger (org.apache.commons.beanutils.converters.BooleanConverter). log4j:WARN Please initialize the log4j system properly. Executing Maven: -B -f <https://builds.apache.org/job/ctakes-trunk-package/ws/pom.xml> -Dmaven.repo.local=/home/jenkins/jenkins-slave/maven-repositories/1 clean install -DskipTests=true -pl ctakes-utils,ctakes-core,ctakes-type-system,ctakes-pos-tagger,ctakes-chunker,ctakes-preprocessor,ctakes-dictionary-lookup,ctakes-context-tokenizer,ctakes-lvg,ctakes-ne-contexts,ctakes-constituency-parser,ctakes-coreference,ctakes-drug-ner,ctakes-side-effect,ctakes-smoking-status,ctakes-dependency-parser,ctakes-relation-extractor,ctakes-pad-term-spotter,ctakes-assertion,ctakes-assertion-zoner,ctakes-temporal,ctakes-clinical-pipeline,ctakes-regression-test,ctakes-assertion-res,ctakes-chunker-res,ctakes-constituency-parser-res,ctakes-core-res,ctakes-coreference-res,ctakes-dependency-parser-res,ctakes-dictionary-lookup-res,ctakes-lvg-res,ctakes-pad-term-spotter-res,ctakes-pos-tagger-res,ctakes-relation-extractor-res,ctakes-side-effect-res,ctakes-smoking-status-res,ctakes-temporal-res,ctakes-assertion-zoner-res,ctakes-drug-ner-res,ctakes-ne-contexts-res,ctakes-template-filler,ctakes-examples [INFO] Scanning for projects... [WARNING] [WARNING] Some problems were encountered while building the effective model for org.apache.ctakes:ctakes-assertion:jar:3.1.2-SNAPSHOT [WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: junit:junit:jar -> duplicate declaration of version (?) @ line 154, column 15 [WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-i2b2:jar should not point at files within the project directory, ${project.basedir}/lib/med-facts-i2b2-1.2-SNAPSHOT.jar will be unresolvable by dependent projects @ line 197, column 16 [WARNING] 'dependencies.dependency.systemPath' for org.mitre.medfacts:medfacts-zoner:jar should not point at files within the project directory, ${project.basedir}/lib/med-facts-zoner-1.1.jar will be unresolvable by dependent projects @ line 204, column 16 [WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.core:jcarafe.core:jar should not point at files within the project directory, ${project.basedir}/lib/jcarafe-core_2.9.1-0.9.8.3.RC4.jar will be unresolvable by dependent projects @ line 211, column 16 [WARNING] 'dependencies.dependency.systemPath' for org.mitre.jcarafe.ext:jcarafe.ext:jar should not point at files within the project directory, ${project.basedir}/lib/jcarafe-ext_2.9.1-0.9.8.3.RC4.jar will be unresolvable by dependent projects @ line 218, column 16 [WARNING] [WARNING] Some problems were encountered while building the effective model for org.apache.ctakes:ctakes-distribution:pom:3.1.2-SNAPSHOT [WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.apache.ctakes:ctakes-ne-contexts:jar -> duplicate declaration of version (?) @ line 99, column 15 [WARNING] [WARNING] Some problems were encountered while building the effective model for org.apache.ctakes:ctakes-ytex:jar:3.1.2-SNAPSHOT [WARNING] 'build.plugins.plugin.version' for org.codehaus.mojo:jaxb2-maven-plugin is missing. @ line 231, column 12 [WARNING] [WARNING] It is highly recommended to fix these problems because they threaten the stability of your build. [WARNING] [WARNING] For this reason, future Maven versions might no longer support building such malformed projects. [WARNING] [ERROR] Could not find the selected project in the reactor: ctakes-pad-term-spotter -> [Help 1] [ERROR] [ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch. [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MavenExecutionException channel stopped
