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https://issues.apache.org/jira/browse/CTAKES-357?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
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James Joseph Masanz updated CTAKES-357:
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Affects Version/s: 3.2.2
Issue Type: Improvement (was: Bug)
> Adding support for mention of Medical Devices
> ---------------------------------------------
>
> Key: CTAKES-357
> URL: https://issues.apache.org/jira/browse/CTAKES-357
> Project: cTAKES
> Issue Type: Improvement
> Components: ctakes-type-system
> Affects Versions: 3.2.1, 3.2.2
> Reporter: Bruce Tietjen
> Priority: Minor
> Fix For: future enhancement
>
>
> To add support for annotating Medical Devices:
> Adding a DeviceMention that uses EntityMention as the supertype:
> TypeSystem.xml:
> <typeDescription>
> <name>org.apache.ctakes.typesystem.type.textsem.DeviceMention</name>
> <description>Corresponds to the UMLS Devices semantic group: medical
> device and research device.</description>
>
> <supertypeName>org.apache.ctakes.typesystem.type.textsem.EntityMention</supertypeName>
> <features>
> <featureDescription>
> <name>entity</name>
> <description/>
>
> <rangeTypeName>org.apache.ctakes.typesystem.type.refsem.Entity</rangeTypeName>
> </featureDescription>
> </features>
> </typeDescription>
> Changes to UmlsToSnomedConsumerImpl.java:
> - add a configuration parameter for deviceTuis (along side the existing
> medicationTuis, procedureTuis, etc.)
> static private final String DEVICE_TUIS_PRP_KEY = "deviceTuis";
> private Set<String> _deviceTuiSet = new HashSet<>();
> - load the list in the constructor (UmlsToSnomedConsumerImpl) and add it to
> _validTuiSet:
> _deviceTuiSet = loadList( props.getProperty( DEVICE_TUIS_PRP_KEY ) );
> // 8
> _validTuiSet.addAll( _deviceTuiSet );
> - add code to getNamedEntityType to set their type to
> CONST.NE_TYPE_ID_DEVICE
> } else if ( _deviceTuiSet.contains( tui ) ) {
> return CONST.NE_TYPE_ID_DEVICE;
> }
> - in consumeHits, add:
> } else if ( conceptKey == CONST.NE_TYPE_ID_DEVICE ) {
> neAnnot = new DeviceMention( jcas );
> }
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