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https://issues.apache.org/jira/browse/CTAKES-363?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
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James Joseph Masanz closed CTAKES-363.
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Resolution: Workaround
In looking to see what changed between 3.1.1 and 3.2.2 since it was reported
that this worked in 3.1.1, I found it fails for me in 3.1.1 using the binary
distribution:
Caused by: org.apache.uima.resource.ResourceInitializationException: Could not
access the resource data at
file:/C:/Users/CH150124/workspaces/apache-ctakes/trunk/ctakes-smoking-status/desc/analysis_engine/ProductionPostSentenceAggregate_step1.xml.
The 3.1.1 convenience binary incorrectly has a path with CH150124 in it.
One workaround for 3.2.2 is as follows:
Copy the directory ctakes-smoking-status-res\src\main\resources\org from
ctakes-smoking-status-res to under CTAKES_HOME\desc
so you have a directory CTAKES_HOME\desc\org
If you don't have a local copy of the source of ctakes-smoking-status-res,
you can check out the needed directory from svn at
https://svn.apache.org/repos/asf/ctakes/tags/ctakes-3.2.2-rc2/ctakes-smoking-status-res/src/main/resources/org
Create CTAKES_HOME\desc\org\apache\ctakes\core
Copy the directory analysis_engine from within ctakes-core\desc to under
CTAKES_HOME\desc\org\apache\ctakes\core
Again, if you don't have the source version of 3.2.2. you can check out the
needed directory from svn from
https://svn.apache.org/repos/asf/ctakes/tags/ctakes-3.2.2-rc2/ctakes-core/desc/analysis_engine/
If we are going to support the SimulatedProdSmokingTAE.xml descriptor in the
future, we either need to change paths that are listed within it, or we need to
include the directories listed above in the convenience binary
Closing this as Workaround.
Suggest people switch to using something other than the CPE GUI once past the
learning stage, as using and maintaining the XML descriptors has fallen out of
favor with many of the cTAKES developers.
> The smoking pipeline gives a URI is not hierarchical error
> ----------------------------------------------------------
>
> Key: CTAKES-363
> URL: https://issues.apache.org/jira/browse/CTAKES-363
> Project: cTAKES
> Issue Type: Bug
> Components: ctakes-smoking-status
> Affects Versions: 3.2.1, 3.2.2
> Environment: I have version 3.2.2 installed in both on a Windows and
> a Mac system.
> Reporter: Harshad
> Assignee: James Joseph Masanz
>
> I am trying to use the Smoking Pipeline using the User version (3.2.2).
> The following is the configuration I use:
> Descriptor: ../apache-ctakes-3.1.1/desc/ctakes-
> core/desc/collection_reader/FilesInDirectoryCollectionReader.xml
> Input Directory: an input folder with test data
> Analysis Engines: SimulatedProdSmokingTAE.xml
> (in the ctakes-smoking-status folder)
> CAS Consumers: FIleWriterCasConsumer.xml
> This worked perfectly in v3.1.1 but now it is giving me an error :
> 'org.apache.uima.resource.ResourceInitializationException:Initialization
> of CAS processor with name "SimulatedProdAggregateTAE" failed.
> CausedBy:
> org.apache.uima.resource.ResourceConfigurationException:Initialization
> of CAS Processor with name "SimulatedProdAggregateTAE" failed.
> CausedBy: java.lang.IllegalArgumentException: URI is not hierarchical'
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