athyanarayana created CTAKES-469:
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Summary: could not able to run ytex with DBCollection reader
Key: CTAKES-469
URL: https://issues.apache.org/jira/browse/CTAKES-469
Project: cTAKES
Issue Type: Bug
Components: ctakes-ytex, ctakes-ytex-uima
Affects Versions: 4.0.0, 4.0.1
Environment: windows 10, java 8, catkes-4 , MS SQL SERVER
fix-SetupAuiFirstWord.CTAKES-334.svn-01.patch
Reporter: athyanarayana
Priority: Critical
Fix For: 4.0.0, 4.0.1
Attachments: out1.txt, ytexerror.png
i cant abel to run ctakes CPE with ytex db collection reder , below is the
error i am getting
Loading model:
................................
Loading model:
.............................
org.apache.uima.resource.ResourceInitializationException: Initialization of CAS
Processor with name "DBCollectionReader.xml" failed.
at
org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initialize(CollectionProcessingEngine_impl.java:81)
at
org.apache.uima.impl.UIMAFramework_impl._produceCollectionProcessingEngine(UIMAFramework_impl.java:420)
at
org.apache.uima.UIMAFramework.produceCollectionProcessingEngine(UIMAFramework.java:918)
at org.apache.uima.tools.cpm.CpmPanel.startProcessing(CpmPanel.java:573)
at org.apache.uima.tools.cpm.CpmPanel.access$000(CpmPanel.java:105)
at org.apache.uima.tools.cpm.CpmPanel$1.run(CpmPanel.java:713)
Caused by: org.apache.uima.resource.ResourceConfigurationException:
Initialization of CAS Processor with name "DBCollectionReader.xml" failed.
at
org.apache.uima.collection.impl.cpm.container.CPEFactory.produceIntegratedCasProcessor(CPEFactory.java:1101)
at
org.apache.uima.collection.impl.cpm.container.CPEFactory.getCasProcessors(CPEFactory.java:547)
at
org.apache.uima.collection.impl.cpm.BaseCPMImpl.init(BaseCPMImpl.java:253)
at
org.apache.uima.collection.impl.cpm.BaseCPMImpl.<init>(BaseCPMImpl.java:127)
at
org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initialize(CollectionProcessingEngine_impl.java:73)
... 5 more
Caused by: org.apache.uima.resource.ResourceInitializationException:
Initialization of annotator class
"org.apache.ctakes.ytex.uima.DBCollectionReader" failed. (Descriptor:
file:/c:/cn/desc/ctakes-ytex-uima/desc/collection_reader/DBCollectionReader.xml)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:271)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:170)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:279)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:331)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:448)
at
org.apache.uima.collection.impl.cpm.container.CPEFactory.produceIntegratedCasProcessor(CPEFactory.java:1085)
... 9 more
Caused by: java.lang.IllegalArgumentException: SQL must not be null
at org.springframework.util.Assert.notNull(Assert.java:112)
at
org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:432)
at
org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:464)
at
org.springframework.jdbc.core.JdbcTemplate.queryForList(JdbcTemplate.java:495)
at
org.springframework.jdbc.core.simple.SimpleJdbcTemplate.queryForList(SimpleJdbcTemplate.java:238)
at
org.apache.ctakes.ytex.uima.DBCollectionReader$1.doInTransaction(DBCollectionReader.java:179)
at
org.apache.ctakes.ytex.uima.DBCollectionReader$1.doInTransaction(DBCollectionReader.java:1)
at
org.springframework.transaction.support.TransactionTemplate.execute(TransactionTemplate.java:130)
at
org.apache.ctakes.ytex.uima.DBCollectionReader.loadDocumentIds(DBCollectionReader.java:173)
at
org.apache.ctakes.ytex.uima.DBCollectionReader.initialize(DBCollectionReader.java:116)
at
org.apache.uima.collection.CollectionReader_ImplBase.initialize(CollectionReader_ImplBase.java:70)
at
org.apache.uima.analysis_engine.impl.compatibility.CollectionReaderAdapter.initialize(CollectionReaderAdapter.java:87)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:266)
... 16 more
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