See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/28/display/redirect?page=changes>
Changes: [seanfinan] Minor refactor (shorter names) [seanfinan] Rewrite of Patient view cache ------------------------------------------ [...truncated 664.50 KB...] [INFO] Sensor JavaSquidSensor [INFO] Configured Java source version (sonar.java.source): 8 [INFO] JavaClasspath initialization [INFO] JavaClasspath initialization (done) | time=0ms [INFO] JavaTestClasspath initialization [INFO] JavaTestClasspath initialization (done) | time=1ms [INFO] Java Main Files AST scan [INFO] 46 source files to be analyzed [WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable [WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable [INFO] Java Main Files AST scan (done) | time=5148ms [INFO] Java Test Files AST scan [INFO] 46/46 source files have been analyzed [INFO] 3 source files to be analyzed [WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable [INFO] Java Test Files AST scan (done) | time=49ms [INFO] Sensor JavaSquidSensor (done) | time=5203ms [INFO] Sensor SCM Sensor [INFO] 3/3 source files have been analyzed [INFO] Sensor SCM Sensor (done) | time=4ms [INFO] Sensor Coverage Report Import [INFO] Sensor Coverage Report Import (done) | time=0ms [INFO] Sensor Coverage Report Import [INFO] Sensor Coverage Report Import (done) | time=0ms [INFO] Sensor Unit Test Results Import [INFO] Sensor Unit Test Results Import (done) | time=0ms [INFO] Sensor SurefireSensor [INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports> [INFO] Sensor SurefireSensor (done) | time=0ms [INFO] Sensor JaCoCoSensor [INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec> [INFO] Sensor JaCoCoSensor (done) | time=0ms [INFO] Sensor JaCoCoItSensor [INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec> [INFO] Sensor JaCoCoItSensor (done) | time=0ms [INFO] Sensor JaCoCoOverallSensor [INFO] Sensor JaCoCoOverallSensor (done) | time=0ms [INFO] Sensor XmlFileSensor [INFO] Sensor XmlFileSensor (done) | time=0ms [INFO] Sensor Zero Coverage Sensor [INFO] Sensor Zero Coverage Sensor (done) | time=6ms [INFO] Sensor Code Colorizer Sensor [INFO] Sensor Code Colorizer Sensor (done) | time=0ms [INFO] Sensor CPD Block Indexer [INFO] JavaCpdBlockIndexer is used for java [INFO] Sensor CPD Block Indexer (done) | time=43ms [INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res [INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res> [INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar> [INFO] Source paths: pom.xml [INFO] Binary dirs: target/classes [INFO] Source encoding: UTF-8, default locale: en_US [INFO] Index files [INFO] 0 files indexed [INFO] Sensor Lines Sensor [INFO] Sensor Lines Sensor (done) | time=1ms [INFO] Sensor SCM Sensor [INFO] Sensor SCM Sensor (done) | time=0ms [INFO] Sensor Coverage Report Import [INFO] Sensor Coverage Report Import (done) | time=0ms [INFO] Sensor Coverage Report Import [INFO] Sensor Coverage Report Import (done) | time=0ms [INFO] Sensor Unit Test Results Import [INFO] Sensor Unit Test Results Import (done) | time=0ms [INFO] Sensor XmlFileSensor [INFO] Sensor XmlFileSensor (done) | time=0ms [INFO] Sensor Zero Coverage Sensor [INFO] Sensor Zero Coverage Sensor (done) | time=0ms [INFO] Sensor Code Colorizer Sensor [INFO] Sensor Code Colorizer Sensor (done) | time=0ms [INFO] Sensor CPD Block Indexer [INFO] Sensor CPD Block Indexer (done) | time=0ms [INFO] ------------- Scan Apache cTAKES [INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/> [INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar> [INFO] Source encoding: UTF-8, default locale: en_US [INFO] Sensor Lines Sensor [INFO] Sensor Lines Sensor (done) | time=1ms [INFO] Sensor SCM Sensor [INFO] Sensor SCM Sensor (done) | time=0ms [INFO] Sensor Coverage Report Import [INFO] Sensor Coverage Report Import (done) | time=0ms [INFO] Sensor Coverage Report Import [INFO] Sensor Coverage Report Import (done) | time=0ms [INFO] Sensor Unit Test Results Import [INFO] Sensor Unit Test Results Import (done) | time=0ms [INFO] Sensor XmlFileSensor [INFO] Sensor XmlFileSensor (done) | time=0ms [INFO] Sensor Zero Coverage Sensor [INFO] Sensor Zero Coverage Sensor (done) | time=0ms [INFO] Sensor Code Colorizer Sensor [INFO] Sensor Code Colorizer Sensor (done) | time=0ms [INFO] Sensor CPD Block Indexer [INFO] Sensor CPD Block Indexer (done) | time=0ms [INFO] Calculating CPD for 1098 files [INFO] CPD calculation finished [INFO] Analysis report generated in 2080ms, dir size=18 MB [INFO] Analysis reports compressed in 3659ms, zip size=7 MB [INFO] Analysis report uploaded in 2270ms [INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes [INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report [INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_GjHbZmqiS_xQKKaVK [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled 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Archiving disabled [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Apache cTAKES ...................................... SUCCESS [05:10 min] [INFO] ctakes-gui-res ..................................... SUCCESS [ 4.204 s] [INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.557 s] [INFO] Apache cTAKES common type system ................... SUCCESS [ 7.400 s] [INFO] Apache cTAKES utils ................................ SUCCESS [ 3.847 s] [INFO] Apache cTAKES core ................................. FAILURE [ 4.577 s] [INFO] ctakes-gui ......................................... SKIPPED [INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.285 s] [INFO] Apache cTAKES part-of-speech tagger ................ SKIPPED [INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.376 s] [INFO] Apache cTAKES chunker .............................. SKIPPED [INFO] Apache cTAKES document preprocessor ................ SKIPPED [INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 14.636 s] [INFO] Apache cTAKES dictionary lookup .................... SKIPPED [INFO] Apache cTAKES context dependent tokenizer .......... SKIPPED [INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 39.973 s] [INFO] Apache cTAKES LVG lexical tools .................... SKIPPED [INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.474 s] [INFO] Apache cTAKES named entity contexts ................ SKIPPED [INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 4.964 s] [INFO] Apache cTAKES Constituency Parser .................. SKIPPED [INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 7.302 s] [INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 2.996 s] [INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.550 s] [INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.224 s] [INFO] Apache cTAKES dictionary lookup fast ............... SKIPPED [INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.184 s] [INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 25.271 s] [INFO] Apache cTAKES Dependency Parser .................... SKIPPED [INFO] Apache cTAKES Assertion ............................ SKIPPED [INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.379 s] [INFO] Apache cTAKES ctakes-clinical-pipeline ............. SKIPPED [INFO] Apache cTAKES Relation Extractor ................... SKIPPED [INFO] Apache cTAKES Temporal Information Extraction ...... SKIPPED [INFO] Apache cTAKES CoReference Resolver ................. SKIPPED [INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 3.423 s] [INFO] Apache cTAKES Drug NER ............................. SKIPPED [INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.541 s] [INFO] Apache cTAKES Side Effects ......................... SKIPPED [INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.542 s] [INFO] Apache cTAKES Smoking Status ....................... SKIPPED [INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.622 s] [INFO] Apache cTAKES Assertion's zoner .................... SKIPPED [INFO] ctakes-examples-res ................................ SUCCESS [ 2.437 s] [INFO] ctakes-examples .................................... SKIPPED [INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.417 s] [INFO] Apache cTAKES YTEX ................................. SKIPPED [INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED [INFO] Apache cTAKES YTEX Web ............................. SKIPPED [INFO] Apache cTAKES Distribution ......................... SKIPPED [INFO] Apache cTAKES Regression-test ...................... SKIPPED [INFO] Apache cTAKES template filler ...................... SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 09:03 min [INFO] Finished at: 2017-11-16T20:37:29Z [INFO] Final Memory: 107M/1622M [INFO] ------------------------------------------------------------------------ [ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-core: Compilation failure: Compilation failure: [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/JdbcCollectionReader.java>:[177,25] [unchecked] unchecked conversion [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/PatientNoteCollector.java>:[37,36] error: cannot find symbol [ERROR] symbol: method addDocument(JCas) [ERROR] location: class PatientNoteStore [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FilesInDirectoryCollectionReader.java>:[113,26] [deprecation] locateFile(String) in FileLocator has been deprecated [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/AbstractPatientConsumer.java>:[66,77] error: cannot find symbol [ERROR] symbol: method getPatientIds() [ERROR] location: class PatientNoteStore [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/AbstractPatientConsumer.java>:[87,55] error: cannot find symbol [ERROR] symbol: method getPatientCas(String) [ERROR] location: class PatientNoteStore [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FileTreeReader.java>:[126,39] error: cannot find symbol [ERROR] symbol: method setDocCount(String,int) [ERROR] location: class PatientNoteStore [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FileTreeReader.java>:[130,78] error: cannot find symbol [ERROR] symbol: method setDocCount(String,Integer) [ERROR] location: class PatientNoteStore [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SentenceDetector.java>:[314,30] [deprecation] train(String,ObjectStream<SentenceSample>,boolean,Dictionary,TrainingParameters) in SentenceDetectorME has been deprecated [ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/util/ListIterable.java>:[34,50] [unchecked] unchecked cast [ERROR] -> [Help 1] [ERROR] [ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch. [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException [ERROR] [ERROR] After correcting the problems, you can resume the build with the command [ERROR] mvn <goals> -rf :ctakes-core Sending e-mails to: [email protected] [email protected] channel stopped
