Kyle Rasku created CTAKES-552:
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Summary: Problems with sno_rx_16ab.xml after patch application
Key: CTAKES-552
URL: https://issues.apache.org/jira/browse/CTAKES-552
Project: cTAKES
Issue Type: Bug
Components: ctakes-dictionary-lookup
Affects Versions: 4.0.0.1
Environment: Windows 10
Reporter: Kyle Rasku
Hello All,
Attempted to download and install the patch version on Windows 10 today.
I tried to run ClinicalPipeline with my API Key (which I have already validated
via the UMLS API test site):
{{bin\runClinicalPipeline -i C:\Input\MyNotes\ --xmiOut C:\Output\MyNotes\
*--key 00a111b3-4c55-5555-5d66-66e7f888ghij*}}
where{{ 00a111b3-4c55-5555-5d66-66e7f888ghij}} is my _Key_.
Got:
+*(With just install of 4.0.0.1)*+
22 Jan 2021 17:00:07 ERROR FileLocator - Could not find
org/apache/ctakes/dictionary/lookup/fast/sno_rx_16ab.xml as absolute or in
$CLASSPATH :
+*(After attempting to xcopy the 4.0 SourceForge resources directory and
re-run)*+
22 Jan 2021 16:43:57 INFO AbstractJCasTermAnnotator - Using Dictionary
Descriptor: org/apache/ctakes/dictionary/lookup/fast/sno_rx_16ab.xml22 Jan 2021
16:43:57 INFO DictionaryDescriptorParser - Parsing dictionary specifications:
22 Jan 2021 16:43:57 INFO UmlsUserApprover - Checking UMLS Account at
[https://utslogin.nlm.nih.gov/cas/v1/api-key]:
...
22 Jan 2021 16:43:58 ERROR UmlsUserApprover - Server returned HTTP response
code: 401 for URL: [https://utslogin.nlm.nih.gov/cas/v1/api-key]22 Jan 2021
16:43:58 ERROR PiperFileRunner - Initialization of annotator class
"org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.
(Descriptor: <unknown>)
Does anyone please know how to fix this?
Is there something in the file I can modify to make it work?
Thank you so much.
Kylie
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