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https://issues.apache.org/jira/browse/CTAKES-539?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17653201#comment-17653201
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Sean Finan commented on CTAKES-539:
-----------------------------------
I added a bridge to use a piper file in the CVD.
Use the PiperFileRunAggregate.xml in desc/ctakes-core. Create your own copy of
PiperFileRunEngine.xml and set the "PiperParams" from "CHANGE_ME" to contain
the command line parameters you would normally use with the piper. For
instance "-p myPiperFile -o myOutputDir".
When you run CVD load PiperFileRunAggregate.xml as your AE.
This should make custom configuration and support a lot easier.
> cTakes 4.0 installation error
> -----------------------------
>
> Key: CTAKES-539
> URL: https://issues.apache.org/jira/browse/CTAKES-539
> Project: cTAKES
> Issue Type: Bug
> Reporter: santanu barkakati
> Priority: Major
>
> I am trying to follow the user installation guide, but got error in below
> step1 of
> h3. CAS Visual Debugger (CVD)
> bin\runctakesCVD.bat
> desc\ctakes-clinical-pipeline\desc\analysis_engine\AggregatePlaintextFastUMLSProcessor.xml
> Would appreciate some direction.
> *Below is the error from log file:*
> 12:03:17.219 - 1: org.apache.uima.tools.cvd.MainFrame.handleException(526):
> SEVERE: Initialization of annotator class
> "org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator"
> *{color:#FF0000}failed.{color}* (Descriptor:
> file:/C:/Users/sbarkakati/cTakes/apache-ctakes-4.0.0/desc/ctakes-dictionary-lookup-fast/desc/analysis_engine/UmlsLookupAnnotator.xml)12:03:17.219
> - 1: org.apache.uima.tools.cvd.MainFrame.handleException(526): SEVERE:
> Initialization of annotator class
> "org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.
> (Descriptor:
> file:/C:/Users/sbarkakati/cTakes/apache-ctakes-4.0.0/desc/ctakes-dictionary-lookup-fast/desc/analysis_engine/UmlsLookupAnnotator.xml)org.apache.uima.resource.ResourceInitializationException:
> Initialization of annotator class
> "org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.
> (Descriptor:
> file:/C:/Users/sbarkakati/cTakes/apache-ctakes-4.0.0/desc/ctakes-dictionary-lookup-fast/desc/analysis_engine/UmlsLookupAnnotator.xml)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:271)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:170)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:279) at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:407)
> at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:256)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:429)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:373)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:186)
> at
> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
> at
> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:279) at
> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:371)
> at org.apache.uima.tools.cvd.MainFrame.setupAE(MainFrame.java:1484) at
> org.apache.uima.tools.cvd.MainFrame.loadAEDescriptor(MainFrame.java:476) at
> org.apache.uima.tools.cvd.CVD.main(CVD.java:164)Caused by:
> org.apache.uima.resource.ResourceInitializationException at
> org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:131)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:266)
> ... 16 moreCaused by: java.io.FileNotFoundException: No File exists at
> org/apache/ctakes/dictionary/lookup/fast/sno_rx_16ab.xml at
> org.apache.ctakes.core.resource.FileLocator.getFullPath(FileLocator.java:193)
> at
> org.apache.ctakes.core.resource.FileLocator.locateFile(FileLocator.java:99)
> at
> org.apache.ctakes.core.resource.FileLocator.getAsStream(FileLocator.java:73)
> at
> org.apache.ctakes.core.resource.FileLocator.getAsStream(FileLocator.java:53)
> at
> org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTe
>
> rmAnnotator.java:128) ... 17 more
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