Hey,
I’m trying to put together a document containing citations as well as a
publication list. I would like to have the text for the citation black and the
hyperlink in blue. Similar as suggested in
https://wiki.contextgarden.net/References_notes_and_floats/Bibliography_and_citations#Colored_links_in_bibliography_entries
So for the main text, I do
\setupinteraction[
state=start,
color=blue,
contrastcolor=,
click=yes,
style=,
]
And for the bibliography and publications
\setupinteraction[color=blue, contrastcolor=black]
This works well with context 2023.03.10 12:15, however, in more recent versions
2024.06.21 23:45 and 2026.01.08 23:30, this stopped working and parts of the
bibliography are all blue.
I tried to put together a minimal working example below.
Any ideas how to fix this?
Thank you very much in advance
Ben
\enableregime[utf]
% buffer for publications
\startbuffer[testdata]
@Article{Abbe:AmA9:413,
author = {Abbe, E.},
title = {Beitr{\"a}ge zur {T}heorie des {M}ikroskops und der
mikroskopischen {W}ahrnehmung},
journal = {Arch. Mikrosk. Anat.},
year = 1873,
volume = 9,
number = 1,
pages = {413--418},
ISSN = {0176-7364},
doi = {10.1007/BF02956173},
url = {http://dx.doi.org/10.1007/BF02956173},
}
@Article{AbdElRahim:JPCA109:8507,
author = {{Abd El Rahim}, M and Antoine, R and Broyer, M and Rayane, D
and Dugourd, Ph},
title = {Asymmetric top rotors in electric fields: influence of chaos
and collisions in
molecular beam deflection experiments.},
year = 2005,
month = sep,
journal = {J. Phys. Chem. A},
volume = 109,
number = 38,
pages = {8507--8514},
doi = {10.1021/jp053127p},
url = {http://www.ncbi.nlm.nih.gov/pubmed/16834247},
}
@Article{Ablikim:PCCP19:13419,
author = {Ablikim, Utuq and Bomme, C{\'e}dric and Savelyev, Evgeny and
Xiong, Hui and
Kushawaha, Rajesh and Boll, Rebecca and Amini, Kasra and
Osipov, Timur and
Kilcoyne, David and Rudenko, Artem and Berrah, Nora and
Rolles, Daniel},
title = {Isomer-dependent fragmentation dynamics of inner-shell
photoionized
difluoroiodobenzene},
journal = {Phys. Chem. Chem. Phys.},
year = 2017,
volume = 19,
number = 21,
pages = {13419--13431},
month = may,
url = {http://dx.doi.org/10.1039/C7CP01379E},
doi = {10.1039/C7CP01379E},
}
@Article{Ablikim:RSI90:055103,
author = {Ablikim, Utuq and Bomme, Cédric and Osipov, Timur and Xiong,
Hui and Obaid, Razib
and Bilodeau, René C. and Kling, Nora G. and Dumitriu, Ileana
and Augustin, Sven
and Pathak, Shashank and Schnorr, Kirsten and Kilcoyne, David
and Berrah, Nora and
Rolles, Daniel },
title = {A coincidence velocity map imaging spectrometer for ions and
high-energy electrons
to study inner-shell photoionization of gas-phase molecules},
journal = {Rev. Sci. Instrum.},
year = 2019,
volume = 90,
number = 5,
pages = 055103,
url = {https://doi.org/10.1063/1.5093420},
doi = {10.1063/1.5093420},
}
@Article{AboRiziq:2011jy,
author = {Abo-Riziq, Ali and Grace, Louis and Crews, Bridgit and
Callahan, Michael P and van
Mourik, Tanja and Vries, Mattanjah S de},
title = {Conformational Structure of Tyrosine, Tyrosyl-glycine, and
Tyrosyl-glycyl-glycine
by Double Resonance Spectroscopy},
journal = {J. Phys. Chem. A},
year = 2011,
volume = 115,
number = 23,
pages = {6077--6087},
month = jun,
doi = {10.1021/jp110601w},
}
@Article{AboRiziq:acie45:5166,
title = {Spectroscopy of Isolated Gramicidin Peptides},
author = {Abo-Riziq, Ali and Crews, Bridgit O. and Callahan, Michael P.
and Grace, Louis and
de Vries, Mattanjah S.},
journal = {Angew. Chem. Int. Ed.},
volume = 45,
number = 31,
pages = {5166–5169},
year = 2006,
doi = {10.1002/anie.200601516},
url =
{http://onlinelibrary.wiley.com/doi/10.1002/anie.200601516/full},
}
@Article{Abouafmarguin:CPL447:232,
title = {Nuclear spin conversion of water diluted in solid argon at
4.2 {K}: {E}nvironment
and atmospheric impurities effects},
author = {L. Abouaf-Marguin and A.-M. Vasserot and C. Pardanaud and X.
Michaut},
journal = {Chem. Phys. Lett.},
volume = 447,
number = 4,
pages = {232–235},
year = 2007,
doi = {10.1016/j.cplett.2007.09.014},
url =
{http://www.sciencedirect.com/science/article/pii/S0009261407012377},
}
@InProceedings{Abouali:IEEEconf2007:1076-1080,
author = {O. {Abouali} and G. {Ahmadi}},
booktitle = {2007 2nd IEEE International Conference on Nano/Micro
Engineered and Molecular
Systems},
title = {An Axisymmetric Model for Diffusion of Nano-Particles},
doi = {10.1109/NEMS.2007.352204},
url = {https://doi.org/10.1109/NEMS.2007.352204},
year = 2007,
pages = {1076--1080},
keywords = {Brownian motion;diffusion;nanoparticles;axisymmetric
model;diffusion;nanoparticles;Eulerian approach;concentration
distribution
equation;mean square radial displacements;Cartesian
directions;Langevin
equation;Brownian motion;radial direction;Lagrangian particle
trajectory
analysis;one-way coupling model;particle equation of
motion;Equations;Computational modeling;Predictive
models;Lagrangian
functions;Systems engineering and theory;Mechanical
engineering;USA
Councils;Performance analysis;Analysis of variance;Numerical
simulation;nano;micro;diffusion;axi-symmetric},
}
@Article{Abraham:AO37:1762,
author = {Eric R.I. Abraham and Eric A. Cornell},
journal = {Applied Optics},
number = 10,
pages = {1762--1763},
publisher = {OSA},
title = {Teflon feedthrough for coupling optical fibers into ultrahigh
vacuum systems},
volume = 37,
month = {Apr},
year = 1998,
doi = {10.1364/AO.37.001762},
}
@Article{Abraham:RCMP28:1,
title = {Zur elektrodynamik bewegter k{\"o}rper},
author = {Abraham, Max},
journal = {Rendiconti del Circolo Matematico di Palermo (1884-1940)},
volume = 28,
number = 1,
pages = {1--28},
year = 1909,
publisher = Springer,
}
\stopbuffer
% buffer for bibliography
\startbuffer[testbib]
@Article{Akkerman:JChemCryst33:969,
abstract = {A single crystal of phase 1 of 1,2-difluoroethane was grown
from the melt directly
on an X-ray diffractometer close to the melting point of 169
K. It crystallizes in
the monoclinic space group C2/c with lattice parameters a =
7.775(4), b =
4.4973(7), c = 9.024(3) Angstrom, beta = 101.73(1)degrees, V
= 308.9(2)
Angstrom(3), d(calc) = 1.420 g cm(-3) for Z = 4. A second
phase of
1,2-difluoroethane was obtained under similar conditions
which crystallizes in the
orthorhombic space group P2(1)2(1)2(1) with the unit cell
parameters a =
8.0467(16), b = 4.5086(9), c = 8.279(2) Angstrom, V =
300.36(11) Angstrom(3),
d(calc) = 1.461 g cm(-3) for Z = 4. In both phases the
1,2-difluoroethane
molecules adopt the gauche conformation with F - C - C - F
torsion angles close to
68degrees. Crystals of 1,2-diiodoethane C2H4I2 were grown
from pentane at
-30degreesC. A platelet single crystal of the size 0.35 X
0.25 X 0.03 mm was
measured with Mo Kalpha-radiation at 153 K. 1,2-Diiodoethane
crystallizes in the
monoclinic space group P2(1)/n with a unit cell of a =
4.6051(7), b = 12.939(2), c
= 4.7318(7) Angstrom, c = 4.7318(7) Angstrom, beta =
104.636(3)degrees, V =
272.79(7) Angstrom(3). Z = 2, d(calc) = 3.431 g cm(-3),
mu(MoKalpha) = 11.353
mm(-1). In the molecule the two neighboring iodine atoms are
positioned anti. The
shortest intermolecular contacts occur via iodine-iodine
interactions resulting in
layers of molecules in the crystal.},
author = {F Akkerman and J Buschmann and D Lentz and P Luger and E
Rodel},
journal = {J Chem Crystallogr},
month = {Jan},
number = 12,
pages = {969--975},
title = {Crystal and molecular structure of 1,2-difluoroethane and
1,2-diiodoethane},
volume = 33,
year = 2003,
}
@Article{Akre:2001,
author = {Akre, R and Bentson, L and Emma, P and Krejcik, P},
journal = {Conf.Proc.},
pages = {2353--2355},
reportnumber = {SLAC-PUB-8864, PAC-2001-WPAH116, LCLS-TN-00-12},
title = {A transverse RF deflecting structure for bunch length and
phase space diagnostics},
volume = {C0106181},
year = 2001,
}
@Article{Aksakal:NIMPRS600:155,
author = {Hüsnü Aksakal and Ertan Arıkan},
title = {A feasibility study of TAC IR-FEL project },
journal = {Nuclear Instruments and Methods in Physics Research Section
A: Accelerators, Spectrometers,
Detectors and Associated Equipment},
volume = 620,
number = {2–3},
pages = {155--158},
year = 2010,
ISSN = {0168-9002},
doi = {10.1016/j.nima.2010.04.016},
url =
{http://www.sciencedirect.com/science/article/pii/S0168900210008168},
}
@Article{Al-Refaie:MNRAS448:1704,
title = {{ExoMol} line lists --- {VIII}. A variationally computed line
list for
hot formaldehyde},
author = {Al-Refaie, Ahmed F and Yachmenev, Andrey and Tennyson,
Jonathan and Yurchenko,
Sergei N},
journal = {Monthly Notices of the Royal Astronomical Society},
volume = 448,
number = 2,
pages = {1704--1714},
year = 2015,
publisher = {Oxford University Press},
doi = {10.1093/mnras/stv091},
}
@Article{Al-Refaie:MNRAS461:1012,
doi = {10.1093/mnras/stw1295},
url = {https://doi.org/10.1093\%2Fmnras\%2Fstw1295},
year = 2016,
month = {may},
publisher = {Oxford University Press ({OUP})},
volume = 461,
number = 1,
pages = {1012--1022},
author = {Ahmed F. Al-Refaie and Oleg L. Polyansky and Roman I.
Ovsyannikov and Jonathan
Tennyson and Sergei N. Yurchenko},
title = {{ExoMol} line lists --- {XV}. A new hot line list for
hydrogen peroxide},
journal = {Monthly Notices of the Royal Astronomical Society}
,
}
@Article{AlAmiedy:JPD16:1429,
abstract = {A novel type of electrostatic state selector for molecules
has been devised which
has a high transparency to rejected molecules and permits
focusing of molecules
with mu eff<0. The electrode geometry is that of a
single-wire helix placed
concentrically within a coaxial outer electrode, which may be
the vacuum chamber
itself. Theoretical analysis of the electrostatic potential
within the helix
reveals that the device has the characteristics of a 'leaky'
potential well for a
molecular beam passing through it. An optimal electrode
geometry of a helix pitch
three to four times the helix radius is calculated.
Experimental results are
obtained for the unifilar helix focuser in a molecular beam
maser oscillator and
spectrometer, the latter being used as a beam detector.
Whilst the state selector
in its present form appears to have state selection
properties somewhat inferior
to existing electrostatic focusers, it is unique in respect
of its simplicity of
construction},
author = {Al-{A}miedy, D. H. H. and Dugdale, D. E. and Lain\'e, D. C.},
journal = {J. Phys. D: Appl. Phys.},
pages = {1429--1438},
title = {Single-wire helical state selector for molecular-beam masers},
volume = 16,
year = 1983,
}
@Article{AlAmiedy:PL66A:94,
author = {Al-{A}miedy, D. H. H. and Lain\'e, D. C.},
doi = {10.1016/0375-9601(78)90005-1},
journal = {Physics Letters A},
number = 2,
pages = {94--96},
title = {Ring-type state selector and space focuser for molecules with
a positive induced
dipole moment},
volume = 66,
year = 1978,
}
@Article{AlRefaie:JINST14:P10003,
author = {Ahmed Al-Refaie and Melby Johny and Jonathan Correa and David
Pennicard and Peter
Svihra and Andrei Nomerotski and Sebastian Trippel and Jochen
Küpper},
title = {{PymePix}: A {P}ython library for {SPIDR} readout of
{T}imepix3},
year = 2019,
journal = {Journal of Instrumentation},
volume = 14,
number = 10,
pages = {P10003},
doi = {10.1088/1748-0221/14/10/P10003},
url =
{https://iopscience.iop.org/article/10.1088/1748-0221/14/10/P10003/meta},
archiveprefix= {arXiv},
eprint = {1905.07999},
primaryclass = {physics},
}
@Article{AlRefaie:MNRAS448:1704,
year = 2015,
month = feb,
publisher = OUP,
volume = 448,
number = 2,
pages = {1704--1714},
author = {A. F. Al-Refaie and A. Yachmenev and J. Tennyson and S. N.
Yurchenko},
title = {{ExoMol} line lists - {VIII}. {A} variationally computed line
list for hot
formaldehyde},
journal = {Monthly Notices of the Royal Astronomical Society},
doi = {10.1093/mnras/stv091},
url = {https://doi.org/10.1093/mnras/stv091},
}
@Article{Alauddin:PCCP17:2169,
author = {Alauddin, Mohammad and Biswal, Himansu S. and Gloaguen, Eric
and Mons, Michel},
title = {Intra-residue interactions in proteins: interplay between
serine or cysteine side
chains and backbone conformations{,} revealed by laser
spectroscopy of isolated
model peptides},
journal = {Physical Chemistry Chemical Physics},
year = 2015,
volume = 17,
issue = 3,
pages = {2169--2178},
publisher = {The Royal Society of Chemistry},
doi = {10.1039/C4CP04449E},
url = {http://dx.doi.org/10.1039/C4CP04449E},
abstract = {Intra-residue interactions play an important role in proteins
by influencing local
folding of the backbone. Taking advantage of the capability
of gas phase
experiments to provide relevant information on the intrinsic
H-bonding pattern of
isolated peptide chains{,} the intra-residue interactions of
serine and cysteine
residues{,} i.e.{,} OH/SH[three dots{,} centered]OC(i) C6 and
NH(i)[three dots{,}
centered]O/S C5 interactions in Ser/Cys residues{,} are
probed by laser
spectroscopy of isolated peptides. The strength of these
local side chain-main
chain interactions{,} elegantly documented from their IR
spectral features for
well-defined conformations of the main chain{,} demonstrates
that a subtle
competition exists between the two types of intra-residue
bond: the C6 H-bond is
the major interaction with Ser{,} in contrast to Cys where C5
interaction takes
over. The restricted number of conformers observed in the gas
phase experiment
with Ser compared to Cys (where both extended and folded
forms are observed) also
suggests a significant mediation role of these intra-residue
interactions on the
competition between the several main chain folding patterns.},
}
@InBook{Albert:HRS,
author = {Albert, Sieghard and Albert, Karen Keppler and Quack, Martin},
publisher = Wiley,
ISBN = 9780470749593,
title = {High-Resolution {F}ourier Transform Infrared Spectroscopy},
booktitle = {Handbook of High‐resolution Spectroscopy},
doi = {10.1002/9780470749593.hrs042},
url =
{https://onlinelibrary.wiley.com/doi/abs/10.1002/9780470749593.hrs042},
year = 2011,
}
@Article{Albert:PRX10:031050,
doi = {10.1103/physrevx.10.031050},
url = {https://doi.org/10.1103/physrevx.10.031050},
year = 2020,
month = sep,
publisher = {American Physical Society},
volume = 10,
pages = 031050,
number = 3,
author = {Victor V. Albert and Jacob P. Covey and John Preskill},
title = {Robust Encoding of a Qubit in a Molecule},
journal = {Physical Review X},
}
@Book{Alberts:Routledge:2002,
author = {Alberts, B. and Johnson, A. and Lewis, J. and Walter, P. and
Raff, M. and Roberts,
K.},
title = {Molecular Biology of the Cell 4th Edition: International
Student Edition},
year = 2002,
publisher = {Routledge},
ISBN = 9780815332886,
url = {https://books.google.de/books?id=ozigkQEACAAJ}
,
}
@Article{Ali:NIMB149:490,
author = {I. Ali and R. Dörner and O. Jagutzki and S. Nüttgens and V.
Mergel and L.
Spielberger and Kh. Khayyat and T. Vogt and H. Bräuning and
K. Ullmann and R.
Moshammer and J. Ullrich and S. Hagmann and K.-O. Groeneveld
and C.L. Cocke and H.
Schmidt-Böcking},
title = {Multi-hit detector system for complete momentum balance in
spectroscopy in
molecular fragmentation processes},
journal = {Nuclear Instruments and Methods in Physics Research Section
B: Beam Interactions with Materials
and Atoms},
volume = 149,
number = 4,
pages = {490--500},
year = 1999,
ISSN = {0168-583X},
doi = {10.1016/S0168-583X(98)00916-1},
url = {http://dx.doi.org/10.1016/S0168-583X(98)00916-1},
}
\stopbuffer
\setupinteraction[
state=start,
color=blue,
contrastcolor=,
click=yes,
style=,
]
\placebookmarks[chapter,section,subsection,subsubsection][chapter,section]
\setupinteractionscreen[option=bookmark]
% enable tracing
\enabletrackers[publications, publications.crossref, publications.details,
publications.cite, publications.strings]
\usebtxdataset[testbib.buffer]
\usebtxdefinitions[aps]
\setupbtx[dataset=main]
\definebtxrendering[bibrendering][aps][dataset=main]
\usebtxdefinitions[aps]
\setupbtx[aps][etallimit=30]
\setupbtx[aps:cite:num][separator:2={\btxcomma}]
\setupbtx[default:cite][alternative=authoryear]
\setupbtxrendering[aps][repeat=yes, continue=yes, method=global]
\starttext
\section{Text}
Some person said something \cite[Alberts:Routledge:2002]
\placefigure[here][fig:test]{A figure}{\externalfigure[cornell.jpg][width=5cm]}
A~\cite[Albert:PRX10:031050] lot~\in{Figure}[fig:test]
of~\cite[Alauddin:PCCP17:2169] random~\cite[AlAmiedy:PL66A:94,
Al-Refaie:MNRAS448:1704]
text \cite[Ali:NIMB149:490] with not sense~\cite[Al-Refaie:MNRAS461:1012].
\section{Bibliography}
\setupinteraction[state=start, color=blue, contrastcolor=black, click=yes]
\placelistofpublications
\section{Publications}
\usebtxdataset[ancient philosophy][testdata.buffer]
\usebtxdefinitions[apa]
\definebtxrendering[ancient philosophy][apa][
dataset=ancient philosophy,
specification=apa,
sorttype=list,
etallimit=30, % Doesn't work for some reason
]
%\setupbtx[apa][etallimit=30] Doesn't work for some reason
\placebtxrendering[ancient philosophy][method=dataset]
\stoptext
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