The problem is that \starttabulate does not accept a format parameter.
Cheap solution (only figured it out now, or I'd have replied before): use
\setuptabulate[alpha][format={....}]
before every \startalpha call.
It's not very contexty syntax, but on the other hand it requires no
new definitions at all.
Full example below.
Cheers,
Sietse
\definetabulate[alpha][|l|] % dummy format
\setuptabulate[alpha][style=bold]
\setuptabulate[alpha][format={|r|r|r|}]
\startalpha
\NC r \NC r \NC r \NC \NR
\NC test \NC test \NC test \NC \NR
\stopalpha
\setuptabulate[alpha][format={|c|c|}]
\startalpha
\NC c \NC c \NC \NR
\NC test \NC test \NC \NR
\stopalpha
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