on the router place this in configuration mode ( configure terminal) :
ip flow-export destination IP_OF_THE_NTOP_MACHINE THE_UDP_PORT_YOU_SELECTED
Other commands you will find usefull :
show ip flow-cache INTERFACE_WHERE_YOU_HAVE_ROUTE_CACHE_ENABLED
(show) ip flow cache ip flow-cache active-timeout ip flow-cache inactive-timeout ip flow-export destination ip flow-export frequency ip flow-export source
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