I'm guessing they are something you don't want to mess with normally since you 
have to turn on advanced features to even see them.
Google found this.
http://www.techrepublic.com/blog/datacenter/a-closer-look-at-windows-server-2008s-active-directory-users-and-computers/364

________________________________
From: David Lum [mailto:[email protected]]
Sent: Tuesday, December 20, 2011 8:11 AM
To: NT System Admin Issues
Subject: Folders in AD

Do you guys have objects in your AD structure off the root that are called 
"Program Data" and "System"? What are those for?
David Lum
Systems Engineer // NWEATM
Office 503.548.5229 // Cell (voice/text) 503.267.9764


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