Hi all, I'm having trouble getting numpy to compile something usable on a cluster I'm using, in particular I see
8< -----------------------------------------------------
ImportError:
/users/kloeckner/mach/x86_64/pool/lib/python2.5/site-packages/numpy/linalg/lapack_lite.so:
undefined symbol: _gfortran_st_write
8< -----------------------------------------------------
Key point: I need -lgfortran on the link command line, or else I get
unresolved symbols stemming from my LAPACK library.
But even if I add this:
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[blas_opt]
libraries = f77blas, cblas, atlas,gfortran
library_dirs = /users/kloeckner/mach/x86_64/pool/lib
include_dirs = /users/kloeckner/mach/x86_64/pool/include
#
[lapack_opt]
libraries = lapack, f77blas, cblas, atlas,gfortran
library_dirs = /users/kloeckner/mach/x86_64/pool/lib
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to site.cfg, numpy seemingly ignores this request and uses ATLAS's ptblas
instead (which I positively do *not* want it to use). How can I fix this?
This is what I get for __config__.py:
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blas_opt_info={'libraries': ['ptf77blas', 'ptcblas', 'atlas'], 'library_dirs':
['/users/kloeckner/mach/x86_64/pool/lib'], 'language': 'c',
'define_macros': [('ATLAS_INFO', '"\\"3.8.1\\""')], 'include_dirs':
['/users/kloeckner/mach/x86_64/pool/include']}
atlas_blas_threads_info={'libraries':
['ptf77blas', 'ptcblas', 'atlas'], 'library_dirs':
['/users/kloeckner/mach/x86_64/pool/lib'], 'langu
age': 'c', 'include_dirs': ['/users/kloeckner/mach/x86_64/pool/include']}
lapack_opt_info={'libraries':
['lapack', 'ptf77blas', 'ptcblas', 'atlas'], 'library_dirs':
['/users/kloeckner/mach/x86_64/pool/lib'], 'lan
guage': 'f77', 'define_macros':
[('ATLAS_INFO', '"\\"3.8.1\\""')], 'include_dirs':
['/users/kloeckner/mach/x86_64/pool/include']}
8< -----------------------------------------------------
Thanks,
Andreas
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