It seems to me, that you are using an libiomp5 for Intel Itanium (lib/intel64) or such, but an MKL for EM64T-processors (lib/em64t). In my case I used EM64T in all cases (I'm running AMD Opteron) . I don't think the two types of libraries are compatible, but I might be wrong.
/Søren On 05-08-2010 21:06, David Warde-Farley wrote: > On 2010-08-04, at 2:18 AM, Matthieu Brucher wrote: > > >> 2010/8/4 Søren Gammelmark<[email protected]>: >> >>> >>>> I wouldn't know for sure, but could this be related to changes to the >>>> gcc compiler in Fedora 13 (with respect to implicit DSO linking) or >>>> would that only be an issue at build-time? >>>> >>>> http://fedoraproject.org/w/index.php?title=UnderstandingDSOLinkChange >>>> >>> I'm not entirely sure I understand the link, but if it has anything to >>> do with the compiler it seems to me that it should be the Intel >>> compiler. The python I use is compiled with GCC but everything in numpy >>> is done with the Intel compilers. Shouldn't it then be something with >>> the Intel compilers? >>> >>> /Søren >>> >> Unfortunately, I think you'll ahve to use Dag's patch. MKL has a >> specific loading procedure since a few releases, you have to abide by >> it. >> > I've been having a similar problem compiling NumPy with MKL on a cluster with > a site-wide license. Dag's site.cfg fails to config if I use 'iomp5' in it, > since (at least with this version, 11.1) libiomp5 is located in > > /scinet/gpc/intel/Compiler/11.1/072/lib/intel64/ > > whereas the actual proper MKL > > /scinet/gpc/intel/Compiler/11.1/072/mkl/lib/em64t/ > > I've tried putting both in my library_dirs separated by a colon as is > suggested by the docs, but python setup.py config fails to find MKL in this > case. Has anyone else run into this issue? > > David > _______________________________________________ > NumPy-Discussion mailing list > [email protected] > http://mail.scipy.org/mailman/listinfo/numpy-discussion > _______________________________________________ NumPy-Discussion mailing list [email protected] http://mail.scipy.org/mailman/listinfo/numpy-discussion
