It seems you are missing libiomp5.so, which is sound if you re using the whole Composer package: the needed libs are split in two different locations, and unfortunately, Numpy cannot cope with this last time I checked (I think it was one of the reasons David Cournapeau created numscons and bento).
Matthieu 2011/9/14 Igor Ying <[email protected]> > Yes, they all are present in that directory. Also, I tried with root as > login. > > -r-xr-xr-x 1 root root 26342559 Aug 9 22:19 libmkl_avx.so > -r--r--r-- 1 root root 1190224 Aug 9 22:26 libmkl_blacs_ilp64.a > -r--r--r-- 1 root root 1191496 Aug 9 22:25 libmkl_blacs_intelmpi_ilp64.a > -r-xr-xr-x 1 root root 497597 Aug 9 22:25 > libmkl_blacs_intelmpi_ilp64.so > -r--r--r-- 1 root root 676206 Aug 9 22:21 libmkl_blacs_intelmpi_lp64.a > -r-xr-xr-x 1 root root 267010 Aug 9 22:21 libmkl_blacs_intelmpi_lp64.so > -r--r--r-- 1 root root 674926 Aug 9 22:22 libmkl_blacs_lp64.a > -r--r--r-- 1 root root 1218290 Aug 9 22:28 libmkl_blacs_openmpi_ilp64.a > -r--r--r-- 1 root root 703042 Aug 9 22:23 libmkl_blacs_openmpi_lp64.a > -r--r--r-- 1 root root 1191152 Aug 9 22:29 libmkl_blacs_sgimpt_ilp64.a > -r--r--r-- 1 root root 675854 Aug 9 22:23 libmkl_blacs_sgimpt_lp64.a > -r--r--r-- 1 root root 425802 Aug 9 20:44 libmkl_blas95_ilp64.a > -r--r--r-- 1 root root 421410 Aug 9 20:44 libmkl_blas95_lp64.a > -r--r--r-- 1 root root 144354 Aug 9 22:29 libmkl_cdft_core.a > -r-xr-xr-x 1 root root 115588 Aug 9 22:29 libmkl_cdft_core.so > -r--r--r-- 1 root root 231886824 Aug 9 22:07 libmkl_core.a > -r-xr-xr-x 1 root root 16730033 Aug 9 22:18 libmkl_core.so > -r-xr-xr-x 1 root root 21474555 Aug 9 22:18 libmkl_def.so > -r--r--r-- 1 root root 14974574 Aug 9 22:06 libmkl_gf_ilp64.a > -r-xr-xr-x 1 root root 7008828 Aug 9 22:48 libmkl_gf_ilp64.so > -r--r--r-- 1 root root 15140998 Aug 9 22:06 libmkl_gf_lp64.a > -r-xr-xr-x 1 root root 7055304 Aug 9 22:48 libmkl_gf_lp64.so > -r--r--r-- 1 root root 16435120 Aug 9 22:07 libmkl_gnu_thread.a > -r-xr-xr-x 1 root root 9816940 Aug 9 22:49 libmkl_gnu_thread.so > -r--r--r-- 1 root root 14968130 Aug 9 22:06 libmkl_intel_ilp64.a > -r-xr-xr-x 1 root root 7008368 Aug 9 22:48 libmkl_intel_ilp64.so > -r--r--r-- 1 root root 15134406 Aug 9 22:06 libmkl_intel_lp64.a > -r-xr-xr-x 1 root root 7053588 Aug 9 22:48 libmkl_intel_lp64.so > -r--r--r-- 1 root root 2472940 Aug 9 22:07 libmkl_intel_sp2dp.a > -r-xr-xr-x 1 root root 1191479 Aug 9 22:20 libmkl_intel_sp2dp.so > -r--r--r-- 1 root root 27642508 Aug 9 22:07 libmkl_intel_thread.a > -r-xr-xr-x 1 root root 17516608 Aug 9 22:49 libmkl_intel_thread.so > -r--r--r-- 1 root root 5350948 Aug 9 20:44 libmkl_lapack95_ilp64.a > -r--r--r-- 1 root root 5413476 Aug 9 20:44 libmkl_lapack95_lp64.a > -r-xr-xr-x 1 root root 29543829 Aug 9 22:19 libmkl_mc3.so > -r-xr-xr-x 1 root root 25428037 Aug 9 22:19 libmkl_mc.so > -r-xr-xr-x 1 root root 22888659 Aug 9 22:18 libmkl_p4n.so > -r--r--r-- 1 root root 19232716 Aug 9 22:07 libmkl_pgi_thread.a > -r-xr-xr-x 1 root root 12243062 Aug 9 22:49 libmkl_pgi_thread.so > -r-xr-xr-x 1 root root 4984870 Aug 9 22:49 libmkl_rt.so > -r--r--r-- 1 root root 10367758 Aug 9 22:49 libmkl_scalapack_ilp64.a > -r-xr-xr-x 1 root root 6574928 Aug 9 22:50 libmkl_scalapack_ilp64.so > -r--r--r-- 1 root root 10292432 Aug 9 22:49 libmkl_scalapack_lp64.a > -r-xr-xr-x 1 root root 6452627 Aug 9 22:50 libmkl_scalapack_lp64.so > -r--r--r-- 1 root root 9958444 Aug 9 22:07 libmkl_sequential.a > -r-xr-xr-x 1 root root 5926347 Aug 9 22:48 libmkl_sequential.so > -r--r--r-- 1 root root 1048 Aug 9 16:50 libmkl_solver_ilp64.a > -r--r--r-- 1 root root 1048 Aug 9 16:50 > libmkl_solver_ilp64_sequential.a > -r--r--r-- 1 root root 1048 Aug 9 16:50 libmkl_solver_lp64.a > -r--r--r-- 1 root root 1048 Aug 9 16:50 > libmkl_solver_lp64_sequential.a > -r-xr-xr-x 1 root root 6711968 Aug 9 22:48 libmkl_vml_avx.so > -r-xr-xr-x 1 root root 2795928 Aug 9 22:47 libmkl_vml_def.so > -r-xr-xr-x 1 root root 5476786 Aug 9 22:48 libmkl_vml_mc2.so > -r-xr-xr-x 1 root root 5778052 Aug 9 22:48 libmkl_vml_mc3.so > -r-xr-xr-x 1 root root 5382511 Aug 9 22:48 libmkl_vml_mc.so > -r-xr-xr-x 1 root root 4235841 Aug 9 22:48 libmkl_vml_p4n.so > drwxr-xr-x 3 root root 4096 Aug 18 11:43 locale > Y > > > you can reach the person managing the list at > [email protected] > > > Message: 1 > Date: Tue, 13 Sep 2011 09:58:27 -0400 > From: Olivier Delalleau <[email protected]> > Subject: Re: [Numpy-discussion] Numpy - MKL - build error > To: Discussion of Numerical Python <[email protected]> > Message-ID: > <cafxk4bpdn7qcwmze2g565gsuontau7lmh4fgsth_zy_r+nl...@mail.gmail.com> > Content-Type: text/plain; charset="iso-8859-1" > > > Sorry if it sounds like a stupid question, but are the files listed in the > error message present in that directory? > If yes, maybe try running the command with sudo, just in case it would be > some weird permission issue. > > -=- Olivier > > 2011/9/13 Igor Ying <[email protected]> > > > Hi, > > > > I am very new to Numpy and trying to build Numpy 1.6.1 with Intel MKL > > 10.3.6 and getting the following errors. > > > > $python setup.py config --compiler=intel build_clib --compiler=intel > > build_ext --compiler=intel install > > > > Running from numpy source directory.F2PY Version 2 > > blas_opt_info: > > blas_mkl_info: > > libraries mkl_def,mkl_intel_lp64,mkl_intel_thread,mkl_core,iomp5md not > > found in /opt/intel/composer_xe_2011_sp1/mkl/lib/intel64 > > NOT AVAILABLE > > > > I have modified the site.cfg as below. > > > > [mkl] > > library_dirs = /opt/intel/composer_xe_2011_sp1/mkl/lib/intel64 > > include_dirs = /opt/intel/composer_xe_2011_sp1/mkl/include > > mkl_libs = mkl_def,mkl_intel_lp64,mkl_intel_thread,mkl_core,iomp5md > > lapack_libs = mkl_lapack_lp64 > > > > > > Environment variables are also set to point to mkl libraries. > > > > source /opt/intel/composer_xe_2011_sp1/bin/compilervars.sh intel64 lp64 > > > > export OMP_NUM_THREADS=4 > > > LD_LIBRARY_PATH="/opt/intel/composer_xe_2011_sp1/mkl/lib/intel64:${LD_LIBRARY_PATH}"; > > > > export LD_LIBRARY_PATH > > export > > > LD_RUN_PATH=/opt/lib:/opt1/composer_xe_2011_sp1/lib/intel64:/opt/composer_xe_2011_sp1/mkl/lib/intel64 > > > > Can anyone help me? > > > > > > _______________________________________________ > > NumPy-Discussion mailing list > > [email protected] > > http://mail.scipy.org/mailman/listinfo/numpy-discussion > > > > > > > _______________________________________________ > NumPy-Discussion mailing list > [email protected] > http://mail.scipy.org/mailman/listinfo/numpy-discussion > > -- Information System Engineer, Ph.D. Blog: http://matt.eifelle.com LinkedIn: http://www.linkedin.com/in/matthieubrucher
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