On Thu, Mar 20, 2014 at 4:04 PM, Chia Jing Yi <[email protected]> wrote:
> Hi, > > I plan to plot a sashimi plot to view the alternative splicing event of my > interested "gene" by using MISO. > > After follow the following link, http://genes.mit.edu/burgelab/miso/docs/and > read through the forum. > Unfortunately, I still face some problems to run the complete set of MISO > successful. > > I can run some of the python script but I still fail to run some of it :( > It shown the following error message when I try some of the MISO python > script (compare_miso.py, run_miso.py, sashimi_plot.py, etc). > *.* > *.* > *.* > *ImportError: No module named _ufuncs* > > I can successful run some of the important MISO script (index_gff.py, > sam_to_bam.py). > > I'm downloading everything by using Python-2.7. > I suspect it might due to numpy or scipy installation problem. > Unfortunately, I still fail to figure it out :( > I have try to use Python-3.3. > But it will show the following error message when I try to run all the > python script under MISO : > *.* > *.* > *SyntaxError: invalid syntax* > > I have browse through forum and seqanswer etc. > Unfortunately I still fail to figure out why it happen :( > I have to manual download all the package and install it separately as I > don't have the purposely through access network through server. > It is due to the network security of server at University. > > Thanks and looking forward to hear from any of you. > Hi, you have to give a full traceback otherwise we can't help you. And please don't double post, you sent the same message to scipy-user. Ralf
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