Pavlyk, NumExpr optionally includes MKL's VML at compile-time. You may want to look at its implementation. From what I recall it relies on a function in a bootstrapped __config__.py to determine if MKL is present.
Robert On Thu, Sep 29, 2016 at 7:27 PM, Pavlyk, Oleksandr < oleksandr.pav...@intel.com> wrote: > Hi Julian, > > Thank you very much for the response. It appears to work. > > I work on "Intel Distribution for Python" at Intel Corp. This question was > motivated by work needed to > prepare pull requests with our changes/optimizations to numpy source code. > In particular, the numpy.random_intel package > > https://mail.scipy.org/pipermail/numpy-discussion/2016-June/075693.html > > relies on MKL, but its potential inclusion in numpy should not break the > build if MKL is unavailable. > > Also our benchmarking was pointing at Numpy's sequential memory copying as > a bottleneck. > I am working to open a pull request into the main trunk of numpy to take > advantage of multithreaded > MKL's BLAS dcopy function to do memory copying in parallel for > sufficiently large sizes. > > Related to numpy.random_inter, I noticed that the randomstate package, > which extends numpy.random was > not being made a part of numpy, but rather published on PyPI as a > stand-alone module. Does that mean that > the community decided against including it in numpy's codebase? If so, I > would appreciate if someone could > elaborate on or point me to the reasoning behind that decision. > > Thank you, > Oleksandr > > > > -----Original Message----- > From: NumPy-Discussion [mailto:numpy-discussion-boun...@scipy.org] On > Behalf Of Julian Taylor > Sent: Thursday, September 29, 2016 8:10 AM > To: firstname.lastname@example.org > Subject: Re: [Numpy-discussion] Using library-specific headers > > On 09/27/2016 11:09 PM, Pavlyk, Oleksandr wrote: > > Suppose I would like to take advantage of some functions from MKL in > > numpy C source code, which would require to use > > > > > > > > #include "mkl.h" > > > > > > > > Ideally this include line must not break the build of numpy when MKL > > is not present, so my initial approach was to use > > > > > > > > #if defined(SCIPY_MKL_H) > > > > #include "mkl.h" > > > > #endif > > > > > > > > Unfortunately, this did not work when building with gcc on a machine > > where MKL is present on default LD_LIBRARY_PATH, because then the > > distutils code was setting SCIPY_MKL_H preprocessor variable, even > > though mkl headers are not on the C_INCLUDE_PATH. > > > > > > > > What is the preferred solution to include an external library header > > to ensure that code-base continues to build in most common cases? > > > > > > > > One approach I can think of is to set a preprocessor variable, say > > HAVE_MKL_HEADERS in numpy/core/includes/numpy/config.h depending on an > > outcome of building of a simple _configtest.c using > > config.try_compile(), like it is done in numpy/core/setup.py // > > > > / / > > > > Is there a simpler, or a better way? > > > > hi, > you could put the header into OPTIONAL_HEADERS in > numpy/core/setup_common.py. This will define HAVE_HEADERFILENAME_H for you > but this will not check that the corresponding the library actually exists > and can be linked. > For that SCIPY_MKL_H is probably the right macro, though its name is > confusing as it does not check for the header presence ... > > Can you tell us more about what from mkl you are attempting to add and for > what purpos, e.g. is it something that should go into numpy proper or just > for personal/internal use? > > cheers, > Julian > > > > > _______________________________________________ > NumPy-Discussion mailing list > NumPy-Discussion@scipy.org > https://mail.scipy.org/mailman/listinfo/numpy-discussion > _______________________________________________ > NumPy-Discussion mailing list > NumPy-Discussion@scipy.org > https://mail.scipy.org/mailman/listinfo/numpy-discussion > -- Robert McLeod, Ph.D. Center for Cellular Imaging and Nano Analytics (C-CINA) Biozentrum der Universität Basel Mattenstrasse 26, 4058 Basel Work: +41.061.387.3225 robert.mcl...@unibas.ch robert.mcl...@bsse.ethz.ch <robert.mcl...@ethz.ch> robbmcl...@gmail.com
_______________________________________________ NumPy-Discussion mailing list NumPy-Discussion@scipy.org https://mail.scipy.org/mailman/listinfo/numpy-discussion