Fergal,

Thanks for the (almost alarmingly) quick and thoughtful reply. I'll have to 
think about it all some more.

  - Kevin

On Oct 16, 2013, at 9:48 AM, Fergal Byrne wrote:

Hi Kevin,

Good question. I'm pretty sure that SDR is a crucial central idea in Jeff's 
theory, but let's leave that aside for now.

There's another way of looking at your question, inverting it so to speak. 
Perhaps we have big brains because we need the sparseness in order to process 
information the way we do. Certainly in NuPIC there seems to be a threshold of 
5-600 columns (of the otherwise typical size) in order to have the Spatial 
Pooler and the Temporal Pooler work really well. Below this size the sparseness 
is hard to establish, and the TP hasn't enough active connections to operate 
well. Above this size the capacity is soon so high that it's hard to bang up 
against it.

The model we use in NuPIC is binary (active or not, connected or not, etc), and 
timestep-based. These are simplifications of real neurons, which have many 
signalling styles and which operate asynchronously. Given the limitations of 
measurement of living neocortex, it's unlikely that you could capture the true 
neuron-by-neuron, millisecond-by-millisecond "network traffic" so it's hard to 
claim that the signalling is either very sparse or very dense.

The observation of neurons carrying "several signals" may be explained by a 
high rate of change of input, inhibition and intra-region activity, which could 
cause some overlap in the apparent state of each neuron at any given time. The 
evolving shape of the signal in this case could be said to encode part of the 
data. The analogue of this in HTM/CLA is a specific sequence of SDR's, each of 
which could be regarded as a freeze-frame of the pattern of activity across the 
region. In the CLA (unlike most other networks), the sequences are just as 
important as the individual patterns.

Looked at in this way, any fast-changing series of SDR's would appear "dense" 
if measured at intervals significantly longer than the "timestep" of the 
sequence. So, it's possible that these observations are not in contradiction to 
the HTM/CLA theories, but are the result of the method of measurement.

We do know that inhibitory interneurons act to sparsify activation patterns, 
and we have empirical evidence that (the computational analogue of) this is key 
to getting NuPIC to work. This is why we believe the representations are 
sparse. Any argument in favour of non-sparseness should therefore have one or 
both of a neuroscientific and computational basis.

Regarding orthogonality, you could view an SDR as being a multi-bit (or fuzzy) 
"dense(r) orthogonal" representation, if you observe that closely-related 
inputs give rise to closely-matching outputs. If you "wiggle" the inputs one 
input field at a time, and combine the active bits in the SDR's, you can see 
that each such set of bits represents a multi-bit representation of some aspect 
of the input. Any higher-level columns "seeing" these bits will be detecting a 
similar value of a similar feature. Unlike with the other networks you mention, 
the "orthogonality" is going to be learned by the SP process, rather than 
imposed by the structure of the inputs.

Regards,

Fergal Byrne




On Wed, Oct 16, 2013 at 3:04 PM, Archie, Kevin 
<[email protected]<mailto:[email protected]>> wrote:
I've been sitting on this question for a while, and it came to mind again a 
couple of days ago when I heard Jack Gallant talk about some work by his 
student Alex Huth. He was showing multiple simultaneous recordings from 
prefrontal cortex (I think) and each neuron was carrying several signals, that 
(paraphrasing roughly) couldn't be extracted by looking at individual neurons 
but could be teased out by extracting components from the network activity. 
(John Maunsell and Bill Newsome also gave talks that similarly showed single 
neurons firing in response to lots of things, and pulling out the meaning 
required the context of the network.) The sense I was getting: this is not 
sparse coding.

In traditional neural network models (Hopfield-ish associative memories, 
perceptron networks and the like), generally what you need is not really 
sparseness but orthogonality. Sparseness is one way to get that, but it's a 
space-time tradeoff: you can often build a sparse representation quickly if you 
have plenty of space. There are other ways to get orthogonality, and a dense 
representation would be making a different tradeoff -- and big brains being 
metabolically expensive, space is a nontrivial constraint. A speculation I 
heard some years ago (and I wish I remember from whom; Google yields some 
echoes but no clear origin) is that the hippocampus and entorhinal cx are busy 
during sleep building more compact orthogonal representations of the day's 
input for use by higher association areas.

Pretty clearly the sensory periphery uses sparse representations, and similarly 
for areas with really-motor motor outputs. (Extreme example: V1 certainly uses 
sparse representation. V1 is really freakin' big.) Probably some sparse 
representations persist in, say, anterior temporal, parietal, and frontal cx, 
but I would suspect that compact orthogonal representations would be important 
in higher (and smaller) areas. Of course, my suspicions are not evidence, I'm 
ten years mostly away from the neurophysiology literature, and data beats my 
speculations. Is there direct evidence that higher cortical areas traffic 
exclusively or primarily in sparse representations?

That's the brain theory side. On the more immediately practical side: has 
anyone tried using compact orthogonal representations with NuPIC? Any success 
(or failure) stories? I don't even have a guess to what extent SDR is necessary 
versus just customary.

Thanks,

  - Kevin

p.s. Apologies for the theoretical bent of this question. Too many years 
hanging out in universities have left me tending to think too much rather than 
just getting started.

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Formerly of Adnet [email protected]<mailto:[email protected]> 
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