Here are my errors when trying to use pip for nustudio, plus I just went
ahead and installed the entire scipy stack.
nupic@nupic:~$ sudo pip install nustudio
Requirement already satisfied (use --upgrade to upgrade): nustudio in
/usr/local/lib/python2.7/dist-packages
Requirement already satisfied (use --upgrade to upgrade): numpy==1.8.1 in
/usr/local/lib/python2.7/dist-packages (from nustudio)
Downloading/unpacking scipy==0.14.0 (from nustudio)
Downloading scipy-0.14.0.tar.gz (10.2MB): 10.2MB downloaded
Running setup.py (path:/tmp/pip_build_root/scipy/setup.py) egg_info for
package scipy
warning: no previously-included files matching '*_subr_*.f' found under
directory 'scipy/linalg/src/id_dist/src'
no previously-included directories found matching
'scipy/special/tests/data/boost'
no previously-included directories found matching
'scipy/special/tests/data/gsl'
no previously-included directories found matching 'doc/build'
no previously-included directories found matching 'doc/source/generated'
no previously-included directories found matching '*/__pycache__'
warning: no previously-included files matching '*~' found anywhere in
distribution
warning: no previously-included files matching '*.bak' found anywhere
in distribution
warning: no previously-included files matching '*.swp' found anywhere
in distribution
warning: no previously-included files matching '*.pyo' found anywhere
in distribution
Requirement already satisfied (use --upgrade to upgrade): wsgiref==0.1.2 in
/usr/lib/python2.7 (from nustudio)
Requirement already satisfied (use --upgrade to upgrade): PyOpenGL==3.1.0
in /usr/local/lib/python2.7/dist-packages (from nustudio)
Requirement already satisfied (use --upgrade to upgrade):
PyOpenGL-accelerate==3.1.0 in /usr/local/lib/python2.7/dist-packages (from
nustudio)
Requirement already satisfied (use --upgrade to upgrade): pyqtgraph==0.9.8
in /usr/local/lib/python2.7/dist-packages (from nustudio)
Installing collected packages: scipy
Found existing installation: scipy 0.13.3
Uninstalling scipy:
Successfully uninstalled scipy
Running setup.py install for scipy
blas_opt_info:
blas_mkl_info:
libraries mkl,vml,guide not found in ['/usr/local/lib', '/usr/lib',
'/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
openblas_info:
libraries not found in ['/usr/local/lib', '/usr/lib',
'/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas not found in ['/usr/local/lib',
'/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_blas_info:
libraries f77blas,cblas,atlas not found in ['/usr/local/lib',
'/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
/usr/local/lib/python2.7/dist-packages/numpy/distutils/system_info.py:1521:
UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
warnings.warn(AtlasNotFoundError.__doc__)
blas_info:
libraries blas not found in ['/usr/local/lib', '/usr/lib',
'/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
/usr/local/lib/python2.7/dist-packages/numpy/distutils/system_info.py:1530:
UserWarning:
Blas (http://www.netlib.org/blas/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [blas]) or by setting
the BLAS environment variable.
warnings.warn(BlasNotFoundError.__doc__)
blas_src_info:
NOT AVAILABLE
/usr/local/lib/python2.7/dist-packages/numpy/distutils/system_info.py:1533:
UserWarning:
Blas (http://www.netlib.org/blas/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [blas_src]) or by setting
the BLAS_SRC environment variable.
warnings.warn(BlasSrcNotFoundError.__doc__)
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip_build_root/scipy/setup.py", line 237, in <module>
setup_package()
File "/tmp/pip_build_root/scipy/setup.py", line 234, in setup_package
setup(**metadata)
File
"/usr/local/lib/python2.7/dist-packages/numpy/distutils/core.py", line 135,
in setup
config = configuration()
File "/tmp/pip_build_root/scipy/setup.py", line 173, in configuration
config.add_subpackage('scipy')
File
"/usr/local/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line
966, in add_subpackage
caller_level = 2)
File
"/usr/local/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line
935, in get_subpackage
caller_level = caller_level + 1)
File
"/usr/local/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line
872, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/setup.py", line 12, in configuration
config.add_subpackage('integrate')
File
"/usr/local/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line
966, in add_subpackage
caller_level = 2)
File
"/usr/local/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line
935, in get_subpackage
caller_level = caller_level + 1)
File
"/usr/local/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line
872, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/integrate/setup.py", line 12, in configuration
blas_opt = get_info('blas_opt',notfound_action=2)
File
"/usr/local/lib/python2.7/dist-packages/numpy/distutils/system_info.py",
line 350, in get_info
return cl().get_info(notfound_action)
File
"/usr/local/lib/python2.7/dist-packages/numpy/distutils/system_info.py",
line 509, in get_info
raise self.notfounderror(self.notfounderror.__doc__)
numpy.distutils.system_info.BlasNotFoundError:
Blas (http://www.netlib.org/blas/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [blas]) or by setting
the BLAS environment variable.
Complete output from command /usr/bin/python -c "import setuptools,
tokenize;__file__='/tmp/pip_build_root/scipy/setup.py';exec(compile(getattr(tokenize,
'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))"
install --record /tmp/pip-LhklrF-record/install-record.txt
--single-version-externally-managed --compile:
blas_opt_info:
blas_mkl_info:
libraries mkl,vml,guide not found in ['/usr/local/lib', '/usr/lib',
'/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
openblas_info:
libraries not found in ['/usr/local/lib', '/usr/lib',
'/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas not found in ['/usr/local/lib',
'/usr/lib', '/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
atlas_blas_info:
libraries f77blas,cblas,atlas not found in ['/usr/local/lib', '/usr/lib',
'/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
/usr/local/lib/python2.7/dist-packages/numpy/distutils/system_info.py:1521:
UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
warnings.warn(AtlasNotFoundError.__doc__)
blas_info:
libraries blas not found in ['/usr/local/lib', '/usr/lib',
'/usr/lib/x86_64-linux-gnu']
NOT AVAILABLE
/usr/local/lib/python2.7/dist-packages/numpy/distutils/system_info.py:1530:
UserWarning:
Blas (http://www.netlib.org/blas/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [blas]) or by setting
the BLAS environment variable.
warnings.warn(BlasNotFoundError.__doc__)
blas_src_info:
NOT AVAILABLE
/usr/local/lib/python2.7/dist-packages/numpy/distutils/system_info.py:1533:
UserWarning:
Blas (http://www.netlib.org/blas/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [blas_src]) or by setting
the BLAS_SRC environment variable.
warnings.warn(BlasSrcNotFoundError.__doc__)
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip_build_root/scipy/setup.py", line 237, in <module>
setup_package()
File "/tmp/pip_build_root/scipy/setup.py", line 234, in setup_package
setup(**metadata)
File "/usr/local/lib/python2.7/dist-packages/numpy/distutils/core.py",
line 135, in setup
config = configuration()
File "/tmp/pip_build_root/scipy/setup.py", line 173, in configuration
config.add_subpackage('scipy')
File
"/usr/local/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line
966, in add_subpackage
caller_level = 2)
File
"/usr/local/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line
935, in get_subpackage
caller_level = caller_level + 1)
File
"/usr/local/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line
872, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/setup.py", line 12, in configuration
config.add_subpackage('integrate')
File
"/usr/local/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line
966, in add_subpackage
caller_level = 2)
File
"/usr/local/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line
935, in get_subpackage
caller_level = caller_level + 1)
File
"/usr/local/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line
872, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy/integrate/setup.py", line 12, in configuration
blas_opt = get_info('blas_opt',notfound_action=2)
File
"/usr/local/lib/python2.7/dist-packages/numpy/distutils/system_info.py",
line 350, in get_info
return cl().get_info(notfound_action)
File
"/usr/local/lib/python2.7/dist-packages/numpy/distutils/system_info.py",
line 509, in get_info
raise self.notfounderror(self.notfounderror.__doc__)
numpy.distutils.system_info.BlasNotFoundError:
Blas (http://www.netlib.org/blas/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [blas]) or by setting
the BLAS environment variable.
----------------------------------------
Rolling back uninstall of scipy
Cleaning up...
Command /usr/bin/python -c "import setuptools,
tokenize;__file__='/tmp/pip_build_root/scipy/setup.py';exec(compile(getattr(tokenize,
'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))"
install --record /tmp/pip-LhklrF-record/install-record.txt
--single-version-externally-managed --compile failed with error code 1 in
/tmp/pip_build_root/scipy
Storing debug log for failure in /home/nupic/.pip/pip.log
**************************************************************************
--
Michael Hale
219.448.0219
southshoremedia.com
[email protected] <[email protected]>
On Sun, Oct 19, 2014 at 12:59 PM, Sergey Cleftsow <[email protected]> wrote:
> Hi, David, hi Kalle.
> I tried to apply the David's solution (v 0.14.0) but have failed.
> It says: E: Version '0.14.0' for 'python-scipy' was not found
> Kalle, did you solve the problem?
>
> 2014-09-24 6:36 GMT-07:00 David Ragazzi <[email protected]>:
>
>> Hi Kalle,
>>
>> Could you create a issue for this?
>>
>> https://github.com/nupic-community/nupic.studio/issues
>>
>> In the meantime, try install 0.14.0 version of scipy:
>>
>> apt get install python-scipy=0.14.0
>>
>> Could you give me feedback in the issue that you create? Thanks!
>>
>>
>> On 22 September 2014 04:04, Kalle Tammemäe <[email protected]> wrote:
>>
>>> Hi,
>>>
>>>
>>>
>>> I would also appreciate a little help.
>>>
>>> I’m running Nupic in Virtualbox, using preset VM image (
>>> https://github.com/numenta/nupic/wiki/Running-Nupic-in-a-Virtual-Machine#preset-vm-image).
>>> The base is 64-bit Windows computer (Intel).
>>>
>>>
>>>
>>> Trying to install SciPy there is an error:
>>>
>>> Err http://archive.ubuntu.com/ubuntu/ raring/universe python-scipy
>>> amd64 0.11.0+dfsg1-1ubuntu2
>>>
>>> 404 Not Found [IP: 91.189.88.153 80]
>>>
>>> Failed to fetch
>>> http://archive.ubuntu.com/ubuntu/pool/universe/p/python-scipy/python-scipy_0.11.0+dfsg1-1ubuntu2_amd64.deb
>>> 404 Not Found [IP: 91.189.88.153 80]
>>>
>>> E: Unable to fetch some archives, maybe run apt-get update or try with
>>> --fix-missing?
>>>
>>> ---
>>>
>>>
>>>
>>> Either apt-get update nor –fix-missing do not solve the problem. The
>>> first does not get all packages,
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>> *From:* nupic [mailto:[email protected]] *On Behalf Of *David
>>> Ragazzi
>>> *Sent:* Monday, September 22, 2014 1:33 AM
>>> *To:* Kalle Tammemäe
>>> *Subject:* Re: Introducing NuPIC Studio!
>>>
>>>
>>>
>>> Hi Sergey,
>>>
>>> Probably you'll have to install scipy manually.. Check the README (
>>> https://github.com/DavidRagazzi/nupic.studio/blob/master/README.md)
>>> with new instructions about it and let me know.
>>>
>>> A quote:
>>> """
>>> Except Python, PIP and NuPIC, all dependencies above are already
>>> automatically installed by PIP package. However some packages like SciPy
>>> and PyQt4 might present errors due to conflicts specific to each system
>>> environment. In this case, you will have to install these packages manually
>>> using a package manager like apt, yum, or brew:
>>>
>>> apt-get install python-scipy
>>>
>>> yum install scipy
>>>
>>> brew install scipy
>>>
>>>
>>>
>>> apt-get install python-qt4
>>>
>>> yum install PyQt4
>>>
>>> brew install pyqt
>>> """
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>> On 21 September 2014 16:12, Sergey Cleftsow <[email protected]> wrote:
>>>
>>> Hi, David!
>>> I had tried to install nuStudio but got error:
>>>
>>> --------------------
>>>
>>> Command /usr/bin/python -c "import
>>> setuptools;__file__='/tmp/pip-build-nupic/scipy/setup.py';exec(compile(open(__file__).read().replace('\r\n',
>>> '\n'), __file__, 'exec'))" install --record
>>> /tmp/pip-0Y8ES9-record/install-record.txt
>>> --single-version-externally-managed --user failed with error code 1 in
>>> /tmp/pip-build-nupic/scipy
>>>
>>> --------------------
>>>
>>> What it can be? I always have been working on Windows so I'm not
>>> familiar with lots of issues. In particular I can't found the whole log. It
>>> says:
>>>
>>> --------------------
>>>
>>> Storing complete log in /home/nupic/.pip/pip.log
>>>
>>> --------------------
>>>
>>> ...but I really don't see such a location.
>>>
>>> Can you tell me what could be the problem?
>>>
>>> I use VirtualBox and the instance of OS which Marek has provided for
>>> downloading (NUPIC-03_11_2014.ova).
>>>
>>>
>>>
>>> 2014-09-10 3:39 GMT+04:00 David Ragazzi <[email protected]>:
>>>
>>> Hello NuPICers!
>>>
>>> Just for inform that in all these days I was out, I was creating an a
>>> tool that I believe will be a breakthrough for the community. This tool
>>> calls "NuPIC Studio", or just NuStudio. NuStudio is an all-in-one tool
>>> that allows users create a HTM neural network from scratch, train it,
>>> collect statistics, and share it among the members of the community. It is
>>> not just a visualization tool but an HTM builder, debugger and laboratory
>>> for experiments. It is ideal for newbies with little intimacy with NuPIC
>>> code as well as experts that wish a better productivity. Among its features
>>> and advantages I list:
>>> - Users can open, save, or change their "HTM projects" or of other
>>> developers. A typical project contains data to be trained, neural network
>>> configuration, statistics, etc, which can be shared to be analysed or
>>> integrated with other projects.
>>> - The HTM engine is the own original NuPIC libray (Python distribution).
>>> This means no port, no bindings, no re-implementation, etc. So any changes
>>> in the original nupic source can be immediatedly viewed. This helps users
>>> that wish test improvements like new encoders or even hierarchy, attention,
>>> and motor integration.
>>> - The project is pip-installable and for desktop use.
>>>
>>> Project details:
>>> - All code is implemented in Python. When I say "all code", I really
>>> mean that code like GUI, 3d simulation, etc, are writen in Python and use
>>> open-source and cross platform components.
>>> - All GUI stuff (forms, controls, etc) is implemented in PyQT. PyQT is
>>> the version of the famous QT adapted for python apps, which is open-source,
>>> cross-platform, complete, and very easy to code and change.
>>> - All utilities like XML serialization, canvas 2d, etc, also are
>>> implemented in PyQT.
>>> - A front-end object-oriented layer also written in Python is provided
>>> in order to ease the understanding of the NuPIC code and keep backwards
>>> compatibility. This means that someone with less experience in NuPIC could
>>> re-use this front-end in her projects.
>>>
>>> The project's site is:
>>> https://github.com/DavidRagazzi/nupic.studio
>>>
>>> and you can see some screen-shots attached to this message.
>>>
>>>
>>>
>>> Surely it still is not 100%, and it's expected that some installation
>>> issues arise, but I hope optimize the process as soon as possible. By the
>>> way, it works reasonably well and any people is welcome to try it or even
>>> improve it.
>>>
>>>
>>> I look forward for your feedback, it is very important!
>>>
>>> Cheers,
>>>
>>> David
>>>
>>>
>>>
>>> --
>>>
>>> David Ragazzi
>>> MSc in Sofware Engineer (University of Liverpool)
>>>
>>> Try NuPIC Studio! https://github.com/DavidRagazzi/nupic.studio
>>>
>>> --
>>> "I think James Connolly, the Irish revolutionary, is right when he says
>>> that the only prophets are those who make their future. So we're not
>>> anticipating, we're working for it."
>>>
>>>
>>>
>>>
>>>
>>> --
>>>
>>> SY Sergey V. Cleftsow
>>>
>>>
>>>
>>>
>>> --
>>>
>>> David Ragazzi
>>> MSc in Sofware Engineer (University of Liverpool)
>>> OS Community Commiter at Numenta.org
>>> --
>>> "I think James Connolly, the Irish revolutionary, is right when he says
>>> that the only prophets are those who make their future. So we're not
>>> anticipating, we're working for it."
>>>
>>
>>
>>
>> --
>> David Ragazzi
>> MSc in Sofware Engineer (University of Liverpool)
>> OS Community Commiter at Numenta.org
>> --
>> "I think James Connolly, the Irish revolutionary, is right when he says that
>> the only prophets are those who make their future. So we're not
>> anticipating, we're working for it."
>>
>
>
>
> --
> SY Sergey V. Cleftsow
>
