Thanks again. I think there might be something here. Some lines in the 
configure.base do seem suspicious:

if test -z "$JAVA_HOME"; then
          # This is the location of Java on an OS X box. In this
          # directory we can find the various versions of a
          # JavaVMs. Check for the newest version set the JAVA_HOME
          # variable.
          if test -d "/System/Library/Frameworks/JavaVM.framework"; then
            # Sneak the -framework flag into mkoctfile via LFLAGS
            LFLAGS="$LFLAGS -framework JavaVM"
            JAVA_TEMP="/System/Library/Frameworks/JavaVM.framework"
            JAVA_HOME="${JAVA_TEMP}/Home"
            JAVA_ARCH="${JAVA_TEMP}/Libraries/libjvm_compat.dylib"
            # According to:
            #   http://developer.apple.com/unix/crossplatform.html
            # you need to explicitely set the include path
            JAVA_INCS="-I${JAVA_HOME}/include"
            HAVE_JAVA=yes

JAVA_TEMP/Libraries/libjvm_compat.dylib as well as JAVA_HOME/include 
don't exist on my system. I'm not sure if this is a Lion thing or specific to 
my system. I will try and find the appropriate alternatives, but 
I'm open to suggestions. On a positive note, I did manage to 
get a build of Octave-devel via macports using Sebastian's suggestions.
But I am getting the same exact errors on Java build (so far).


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