AlCoB 2016: call for participation********************************************************************
3rd INTERNATIONAL CONFERENCE ON ALGORITHMS FOR COMPUTATIONAL BIOLOGY AlCoB 2016 Trujillo, Spain June 21-22, 2016 Organized by: Computer Architecture and Logic Design Group (ARCO) University of Extremadura Extremadura Centre for Advanced Technologies (CETA-CIEMAT) and Research Group on Mathematical Linguistics (GRLMC) Rovira i Virgili University http://grammars.grlmc.com/AlCoB2016/ ******************************************************************** PROGRAM Tuesday, June 21 09:00 - 09:30 Registration 09:30 - 09:40 Opening 09:40 - 10:30 S. Cenk Sahinalp: Big Data Algorithmics for Cancer Genomics - Invited Lecture 10:30 - 11:00 Coffee Break 11:00 - 12:15 Daniel Figueiredo: Relating Bisimulations with Attractors in Boolean Network Models Tibor Kmet, Maria Kmetova: Neural Network Simulation of Feeding Adaptations of Daphnia Charmi Panchal, Sepinoud Azimi, Ion Petre: Generating the Logicome of a Biological Network 12:15 - 12:30 Break 12:30 - 13:20 Cedric Chauve, Julien Courtiel, Yann Ponty: Counting, Generating and Sampling Tree Alignments Esteban López-Camacho, María Jesús García Godoy, José García-Nieto, Antonio J. Nebro, José F. Aldana Montes: A New Multi-objective Approach for Molecular Docking Based on RMSD and Binding Energy 13:20 - 15:20 Lunch 15:20 - 16:10 Saad Mneimneh, Syed Ali Ahmed: Gibbs/MCMC Sampling for Multiple RNA Interaction with Sub-optimal Solutions Sourya Bhattacharyya, Jayanta Mukhopadhyay: Accumulated Coalescence Rank and Excess Gene Count for Species Tree Inference 16:10 - 16:25 Break and Group Photo 16:25 - 17:15 Evan Eichler: De Novo Genome Assembly and Structural Variation - Invited Lecture 17:15 - 17:30 Break 17:30 - Poster presentations Wednesday, June 22 09:00 - 09:50 David Sankoff: The Trees in the Peaks - Invited Lecture 09:50 - 10:20 Coffee Break 10:20 - 11:35 Agnieszka Mykowiecka, Pawel Górecki: Bootstrapping Algorithms for Gene Duplication and Speciation Events Laura Urbini, Blerina Sinaimeri, Catherine Matias, Marie-France Sagot: Robustness of the Parsimonious Reconciliation Method in Cophylogeny Carlo Comin, Anthony Labarre, Romeo Rizzi, Stéphane Vialette: Sorting with Forbidden Intermediates 11:35 - 11:50 Break 11:50 - 13:05 Simone Faro: Evaluation and Improvement of Fast Algorithms for Exact Matching on Genome Sequences Mikko Rautiainen, Leena Salmela, Veli Mäkinen: Identification of Variant Compositions in Related Strains without Reference Sergey P. Tsarev, Michael G. Sadovsky: New Error Tolerant Method for Search of Long Repeats in DNA Sequences 13:05 - 13:15 Closing 13:15 - Lunch
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