I'm looking into updating each of these in Fedora and running into a couple of issues. Currently in Fedora Rawhide we have:
- pmix 4.1.2 - prrte 2.0.2 - openmpi 4.1.5 After updating to pmix 4.2.3 I see the following: - openmpi programs fail to run with:mca_base_component_repository_open: unable to open mca_pmix_ext3x: /usr/lib64/openmpi/lib/openmpi/mca_pmix_ext3x.so: undefined symbol: pmix_value_load (ignored)
[[3260,0],0] ORTE_ERROR_LOG: Not found in file ess_hnp_module.c at line 320 -------------------------------------------------------------------------- It looks like orte_init failed for some reason; your parallel process is likely to abort. There are many reasons that a parallel process can fail during orte_init; some of which are due to configuration or environment problems. This failure appears to be an internal failure; here's some additional information (which may only be relevant to an Open MPI developer): opal_pmix_base_select failed --> Returned value Not found (-13) instead of ORTE_SUCCESS - prrte 2.0.2 fails to build with:make[2]: Entering directory '/builddir/build/BUILD/prrte-2.0.2/src/tools/prted' /bin/sh ../../../libtool --tag=CC --mode=link gcc -DPRTE_CONFIGURE_USER="\"mockbuild\"" -DPRTE_CONFIGURE_HOST="\"2188cae5486f485888615d01f56cd6c9\"" -DPRTE_CONFIGURE_DATE="\"Fri Jan 20 00:00:00 UTC 2023\"" -DPRTE_BUILD_USER="\"$USER\"" -DPRTE_BUILD_HOST="\"${HOSTNAME:-`(hostname || uname -n) | sed 1q`}\"" -DPRTE_BUILD_DATE="\"`../../../config/getdate.sh`\"" -DPRTE_BUILD_CFLAGS="\"-DNDEBUG -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -finline-functions -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS\"" -DPRTE_BUILD_CPPFLAGS="\"-iquote/builddir/build/BUILD/prrte-2.0.2 -iquote/builddir/build/BUILD/prrte-2.0.2/src/include\"" -DPRTE_BUILD_LDFLAGS="\"-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes\"" -DPRTE_BUILD_LIBS="\"-lm -levent_core -levent_pthreads -lpmix -lhwloc\"" -DPRTE_CC_ABSOLUTE="\"/usr/bin/gcc\"" -DPRTE_GREEK_VERSION="\"\"" -DPRTE_REPO_REV="\"v2.0.1-8-gaa57929\"" -DPRTE_RELEASE_DATE="\"Feb 10, 2022\"" -DNDEBUG -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -finline-functions -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o prted prted.o ../../../src/libprrte.la -lm -levent_core -levent_pthreads -lpmix -lhwloc libtool: link: gcc -DPRTE_CONFIGURE_USER=\"mockbuild\" -DPRTE_CONFIGURE_HOST=\"2188cae5486f485888615d01f56cd6c9\" "-DPRTE_CONFIGURE_DATE=\"Fri Jan 20 00:00:00 UTC 2023\"" -DPRTE_BUILD_USER=\"mockbuild\" -DPRTE_BUILD_HOST=\"2188cae5486f485888615d01f56cd6c9\" "-DPRTE_BUILD_DATE=\"Fri Jan 20 00:00:00 UTC 2023\"" "-DPRTE_BUILD_CFLAGS=\"-DNDEBUG -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -finline-functions -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS\"" "-DPRTE_BUILD_CPPFLAGS=\"-iquote/builddir/build/BUILD/prrte-2.0.2 -iquote/builddir/build/BUILD/prrte-2.0.2/src/include\"" "-DPRTE_BUILD_LDFLAGS=\"-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes\"" "-DPRTE_BUILD_LIBS=\"-lm -levent_core -levent_pthreads -lpmix -lhwloc\"" -DPRTE_CC_ABSOLUTE=\"/usr/bin/gcc\" -DPRTE_GREEK_VERSION=\"\" -DPRTE_REPO_REV=\"v2.0.1-8-gaa57929\" "-DPRTE_RELEASE_DATE=\"Feb 10, 2022\"" -DNDEBUG -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -finline-functions -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/prted prted.o ../../../src/.libs/libprrte.so -lm -levent_core -levent_pthreads -lpmix -lhwloc make[2]: Leaving directory '/builddir/build/BUILD/prrte-2.0.2/src/tools/prted' /usr/bin/ld: ../../../src/.libs/libprrte.so: undefined reference to `pmix_argv_append_unique_nosize' /usr/bin/ld: ../../../src/.libs/libprrte.so: undefined reference to `PMIx_Byte_object_load' /usr/bin/ld: ../../../src/.libs/libprrte.so: undefined reference to `pmix_argv_join'
collect2: error: ld returned 1 exit status make[2]: *** [Makefile:792: prted] Error 1So I'm guessing an update to prrte 3.0.0 is in order here. But will openmpi 4.1.5 work with prrte 3.0.0?
I've also reported and discussed these issues here: https://github.com/openpmix/openpmix/issues/3022 but figured it would be of interest to other openmpi packagers. -- Orion Poplawski he/him/his - surely the least important thing about me IT Systems Manager 720-772-5637 NWRA, Boulder/CoRA Office FAX: 303-415-9702 3380 Mitchell Lane or...@nwra.com Boulder, CO 80301 https://www.nwra.com/
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