I made up a little tool showing the
difference between ghemical vdw values
and those calculated by hand.

the output is 

...
A T O M   T Y P E S

IDX     TYPE
1       FFFF
2       FFFF
...
S E T T I N G   U P   C A L C U L A T I O N S

SETTING UP BOND CALCULATIONS...
SETTING UP ANGLE CALCULATIONS...
SETTING UP TORSION CALCULATIONS...
SETTING UP VAN DER WAALS CALCULATIONS...
SETTING UP ELECTROSTATIC CALCULATIONS...

E N E R G Y
...

V A N   D E R   W A A L S

ATOM TYPES
 I    J        Rij       kij       ENERGY
-----------------------------------------
FFFF FFFF      3.000     0.176    -0.243
     TOTAL VAN DER WAALS ENERGY =   -0.243 kJ/mol
...
TOTAL ENERGY =   -0.243 kJ/mol


   DIST      GH        REF       DELTA
   1.400  1607.753  1614.302    -6.550
   1.600   313.786   316.725    -2.939
   1.800    71.794    73.244    -1.450
   2.000    18.039    18.809    -0.771
   2.200     4.573     5.008    -0.435
   2.400     0.959     1.217    -0.258
   2.600    -0.010     0.149    -0.160
   2.800    -0.232    -0.130    -0.102
   3.000    -0.243    -0.176    -0.068
   3.200    -0.204    -0.158    -0.046
   3.400    -0.159    -0.127    -0.032
   3.600    -0.121    -0.098    -0.023
   3.800    -0.091    -0.075    -0.016
   4.000    -0.069    -0.057    -0.012
   4.200    -0.053    -0.044    -0.009
   4.400    -0.040    -0.034    -0.007
   4.600    -0.031    -0.026    -0.005
   4.800    -0.024    -0.020    -0.004
   5.000    -0.019    -0.016    -0.003
   5.200    -0.015    -0.013    -0.002
   5.400    -0.012    -0.010    -0.002
   5.600    -0.010    -0.008    -0.002
   5.800    -0.008    -0.007    -0.001



      

Attachment: vdw.cpp
Description: Binary data

------------------------------------------------------------------------------
Join us December 9, 2009 for the Red Hat Virtual Experience,
a free event focused on virtualization and cloud computing. 
Attend in-depth sessions from your desk. Your couch. Anywhere.
http://p.sf.net/sfu/redhat-sfdev2dev
_______________________________________________
OpenBabel-Devel mailing list
OpenBabel-Devel@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/openbabel-devel

Reply via email to