Bugs item #2926117, was opened at 2010-01-05 09:51 Message generated for change (Tracker Item Submitted) made by nobody You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=428740&aid=2926117&group_id=40728
Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Command-line Tools Group: 2.2.x Status: Open Resolution: None Priority: 5 Private: No Submitted By: Nobody/Anonymous (nobody) Assigned to: Nobody/Anonymous (nobody) Summary: crash when converting a CIF file Initial Comment: The attached CIF file makes OpenBabel crashs either if used as a library or using the command-line convertion tool. This appends on a Debian sid with OpenBabel 2.2.3 or on an Ubuntu Hardy with 2.1.1. The message is: cali...@myrte:~/tmp$ babel Open_babel_crash.cif Open_babel_crash.xyz *** glibc detected *** babel: double free or corruption (out): 0x00000000006b6ff0 *** ======= Backtrace: ========= /lib/libc.so.6[0x7f392848008a] /lib/libc.so.6(cfree+0x8c)[0x7f3928483c1c] /usr/lib/libopenbabel.so.2(_ZN9OpenBabel5OBMol14ConnectTheDotsEv+0x59a)[0x7f39293978ea] /usr/lib/openbabel/2.1/cifformat.so(_ZN9OpenBabel9CIFFormat12ReadMoleculeEPNS_6OBBaseEPNS_12OBConversionE+0x560)[0x7f39265f77a0] /usr/lib/openbabel/2.1/cifformat.so(_ZN9OpenBabel16OBMoleculeFormat18ReadChemObjectImplEPNS_12OBConversionEPNS_8OBFormatE+0x7ce)[0x7f392660281e] /usr/lib/openbabel/2.1/cifformat.so(_ZN9OpenBabel16OBMoleculeFormat14ReadChemObjectEPNS_12OBConversionE+0x12)[0x7f39265f8042] /usr/lib/libopenbabel.so.2(_ZN9OpenBabel12OBConversion7ConvertEv+0x90)[0x7f39293a6400] /usr/lib/libopenbabel.so.2(_ZN9OpenBabel12OBConversion7ConvertEPSiPSo+0x1f7)[0x7f39293a7c17] /usr/lib/libopenbabel.so.2(_ZN9OpenBabel12OBConversion11FullConvertERSt6vectorISsSaISsEERSsS4_+0x124e)[0x7f39293aad6e] babel[0x402f26] /lib/libc.so.6(__libc_start_main+0xf4)[0x7f392842a1c4] babel(__gxx_personality_v0+0x81)[0x401de9] ======= Memory map: ======== 00400000-00406000 r-xp 00000000 08:01 70139 /usr/bin/babel 00605000-00606000 rw-p 00005000 08:01 70139 /usr/bin/babel 00606000-006c1000 rw-p 00606000 00:00 0 [heap] 7f3918000000-7f3918021000 rw-p 7f3918000000 00:00 0 7f3918021000-7f391c000000 ---p 7f3918021000 00:00 0 7f391f391000-7f391f3a1000 r-xp 00000000 08:01 920605 /usr/lib/openbabel/2.1/crkformat.so 7f391f3a1000-7f391f5a1000 ---p 00010000 08:01 920605 /usr/lib/openbabel/2.1/crkformat.so 7f391f5a1000-7f391f5a2000 rw-p 00010000 08:01 920605 /usr/lib/openbabel/2.1/crkformat.so 7f391f5a2000-7f391f5b2000 r-xp 00000000 08:01 920650 /usr/lib/openbabel/2.1/yasaraformat.so 7f391f5b2000-7f391f7b2000 ---p 00010000 08:01 920650 /usr/lib/openbabel/2.1/yasaraformat.so 7f391f7b2000-7f391f7b3000 rw-p 00010000 08:01 920650 /usr/lib/openbabel/2.1/yasaraformat.so 7f391f7b3000-7f391f7c1000 r-xp 00000000 08:01 920588 /usr/lib/openbabel/2.1/balstformat.so 7f391f7c1000-7f391f9c1000 ---p 0000e000 08:01 920588 /usr/lib/openbabel/2.1/balstformat.so 7f391f9c1000-7f391f9c2000 rw-p 0000e000 08:01 920588 /usr/lib/openbabel/2.1/balstformat.so 7f391f9c2000-7f391f9cf000 r-xp 00000000 08:01 920606 /usr/lib/openbabel/2.1/CSRformat.so 7f391f9cf000-7f391fbcf000 ---p 0000d000 08:01 920606 /usr/lib/openbabel/2.1/CSRformat.so 7f391fbcf000-7f391fbd0000 rw-p 0000d000 08:01 920606 /usr/lib/openbabel/2.1/CSRformat.so 7f391fbd0000-7f391fbdf000 r-xp 00000000 08:01 920631 /usr/lib/openbabel/2.1/pcmodelformat.so 7f391fbdf000-7f391fdde000 ---p 0000f000 08:01 920631 /usr/lib/openbabel/2.1/pcmodelformat.so 7f391fdde000-7f391fddf000 rw-p 0000e000 08:01 920631 /usr/lib/openbabel/2.1/pcmodelformat.so 7f391fddf000-7f391fe02000 r-xp 00000000 08:01 920602 /usr/lib/openbabel/2.1/cmlformat.so 7f391fe02000-7f3920002000 ---p 00023000 08:01 920602 /usr/lib/openbabel/2.1/cmlformat.so 7f3920002000-7f3920003000 rw-p 00023000 08:01 920602 /usr/lib/openbabel/2.1/cmlformat.so 7f3920003000-7f39200f6000 r-xp 00000000 08:01 920621 /usr/lib/openbabel/2.1/inchiformat.so 7f39200f6000-7f39202f6000 ---p 000f3000 08:01 920621 /usr/lib/openbabel/2.1/inchiformat.so 7f39202f6000-7f39202fa000 rw-p 000f3000 08:01 920621 /usr/lib/openbabel/2.1/inchiformat.so 7f39202fa000-7f3920308000 r-xp 00000000 08:01 920612 /usr/lib/openbabel/2.1/featformat.so 7f3920308000-7f3920507000 ---p 0000e000 08:01 920612 /usr/lib/openbabel/2.1/featformat.so 7f3920507000-7f3920508000 rw-p 0000d000 08:01 920612 /usr/lib/openbabel/2.1/featformat.so 7f3920508000-7f392050b000 r-xp 00000000 08:01 920587 /usr/lib/openbabel/2.1/APIInterface.so 7f392050b000-7f392070a000 ---p 00003000 08:01 920587 /usr/lib/openbabel/2.1/APIInterface.so 7f392070a000-7f392070b000 rw-p 00002000 08:01 920587 /usr/lib/openbabel/2.1/APIInterface.so 7f392070b000-7f3920721000 r-xp 00000000 08:01 920593 /usr/lib/openbabel/2.1/cansmilesformat.so 7f3920721000-7f3920921000 ---p 00016000 08:01 920593 /usr/lib/openbabel/2.1/cansmilesformat.so 7f3920921000-7f3920922000 rw-p 00016000 08:01 920593 /usr/lib/openbabel/2.1/cansmilesformat.so 7f3920922000-7f3920931000 r-xp 00000000 08:01 920590 /usr/lib/openbabel/2.1/boxformat.so 7f3920931000-7f3920b30000 ---p 0000f000 08:01 920590 /usr/lib/openbabel/2.1/boxformat.so 7f3920b30000-7f3920b31000 rw-p 0000e000 08:01 920590 /usr/lib/openbabel/2.1/boxformat.so 7f3920b31000-7f3920b43000 r-xp 00000000 08:01 920627 /usr/lib/openbabel/2.1/mopacformat.so 7f3920b43000-7f3920d42000 ---p 00012000 08:01 920627 /usr/lib/openbabel/2.1/mopacformat.so 7f3920d42000-7f3920d43000 rw-p 00011000 08:01 920627 /usr/lib/openbabel/2.1/mopacformat.so 7f3920d43000-7f3920d51000 r-xp 00000000 08:01 920622 /usr/lib/openbabel/2.1/jaguarformat.so 7f3920d51000-7f3920f51000 ---p 0000e000 08:01 920622 /usr/lib/openbabel/2.1/jaguarformat.so 7f3920f51000-7f3920f52000 rw-p 0000e000 08:01 920622 /usr/lib/openbabel/2.1/jaguarformat.so 7f3920f52000-7f3920f60000 r-xp 00000000 08:01 920584 /usr/lib/openbabel/2.1/acrformat.so 7f3920f60000-7f3921160000 ---p 0000e000 08:01 920584 /usr/lib/openbabel/2.1/acrformat.so 7f3921160000-7f3921161000 rw-p 0000e000 08:01 920584 /usr/lib/openbabel/2.1/acrformat.so 7f3921161000-7f392116f000 r-xp 00000000 08:01 920608 /usr/lib/openbabel/2.1/dmolformat.so 7f392116f000-7f392136f000 ---p 0000e000 08:01 920608 /usr/lib/openbabel/2.1/dmolformat.so 7f392136f000-7f3921370000 rw-p 0000e000 08:01 920608 /usr/lib/openbabel/2.1/dmolformat.so 7f3921370000-7f3921385000 r-xp 00000000 08:01 920603 /usr/lib/openbabel/2.1/cmlreactlformat.so 7f3921385000-7f3921585000 ---p 00015000 08:01 920603 /usr/lib/openbabel/2.1/cmlreactlformat.so 7f3921585000-7f3921586000 rw-p 00015000 08:01 920603 /usr/lib/openbabel/2.1/cmlreactlformat.so 7f3921586000-7f3921593000 r-xp 00000000 08:01 920619 /usr/lib/openbabel/2.1/gromos96format.so 7f3921593000-7f3921793000 ---p 0000d000 08:01 920619 /usr/lib/openbabel/2.1/gromos96format.so 7f3921793000-7f3921794000 rw-p 0000d000 08:01 920619 /usr/lib/openbabel/2.1/gromos96format.so 7f3921794000-7f39217a1000 r-xp 00000000 08:01 920643 /usr/lib/openbabel/2.1/titleformat.so 7f39217a1000-7f39219a1000 ---p 0000d000 08:01 920643 /usr/lib/openbabel/2.1/titleformat.so 7f39219a1000-7f39219a2000 rw-p 0000d000 08:01 920643 /usr/lib/openbabel/2.1/titleformat.so 7f39219a2000-7f39219b1000 r-xp 00000000 08:01 920597 /usr/lib/openbabel/2.1/chem3dformat.so 7f39219b1000-7f3921bb1000 ---p 0000f000 08:01 920597 /usr/lib/openbabel/2.1/chem3dformat.so 7f3921bb1000-7f3921bb2000 rw-p 0000f000 08:01 920597 /usr/lib/openbabel/2.1/chem3dformat.so 7f3921bb2000-7f3921bc0000 r-xp 00000000 08:01 920594 /usr/lib/openbabel/2.1/carformat.so 7f3921bc0000-7f3921dbf000 ---p 0000e000 08:01 920594 /usr/lib/openbabel/2.1/carformat.so 7f3921dbf000-7f3921dc0000 rw-p 0000d000 08:01 920594 /usr/lib/openbabel/2.1/carformat.so 7f3921dc0000-7f3921dce000 r-xp 00000000 08:01 920630 /usr/lib/openbabel/2.1/nwchemformat.so 7f3921dce000-7f3921fce000 ---p 0000e000 08:01 920630 /usr/lib/openbabel/2.1/nwchemformat.so 7f3921fce000-7f3921fcf000 rw-p 0000e000 08:01 920630 /usr/lib/openbabel/2.1/nwchemformat.so 7f3921fcf000-7f3921fe0000 r-xp 00000000 08:01 920633 /usr/lib/openbabel/2.1/povrayformat.so 7f3921fe0000-7f39221e0000 ---p 00011000 08:01 920633 /usr/lib/openbabel/2.1/povrayformat.so 7f39221e0000-7f39221e1000 rw-p 00011000 08:01 920633 /usr/lib/openbabel/2.1/povrayformat.so 7f39221e1000-7f39221e3000 r-xp 00000000 08:01 920604 /usr/lib/openbabel/2.1/copyformat.so 7f39221e3000-7f39223e3000 ---p 00002000 08:01 920604 /usr/lib/openbabel/2.1/copyformat.so 7f39223e3000-7f39223e4000 rw-p 00002000 08:01 920604 /usr/lib/openbabel/2.1/copyformat.so 7f39223e4000-7f39223f2000 r-xp 00000000 08:01 920628 /usr/lib/openbabel/2.1/mpdformat.so 7f39223f2000-7f39225f2000 ---p 0000e000 08:01 920628 /usr/lib/openbabel/2.1/mpdformat.so 7f39225f2000-7f39225f3000 rw-p 0000e000 08:01 920628 /usr/lib/openbabel/2.1/mpdformat.so 7f39225f3000-7f3922601000 r-xp 00000000 08:01 920586 /usr/lib/openbabel/2.1/amberformat.so 7f3922601000-7f3922800000 ---p 0000e000 08:01 920586 /usr/lib/openbabel/2.1/amberformat.so 7f3922800000-7f3922801000 rw-p 0000d000 08:01 920586 /usr/lib/openbabel/2.1/amberformat.so 7f3922801000-7f3922811000 r-xp 00000000 08:01 920641 /usr/lib/openbabel/2.1/thermoformat.so 7f3922811000-7f3922a11000 ---p 00010000 08:01 920641 /usr/lib/openbabel/2.1/thermoformat.so 7f3922a11000-7f3922a12000 rw-p 00010000 08:01 920641 /usr/lib/openbabel/2.1/thermoformat.so 7f3922a12000-7f3922a27000 r-xp 00000000 08:01 920632 /usr/lib/openbabel/2.1/pdbformat.so 7f3922a27000-7f3922c26000 ---p 00015000 08:01 920632 /usr/lib/openbabel/2.1/pdbformat.so 7f3922c26000-7f3922c27000 rw-p 00014000 08:01 920632 /usr/lib/openbabel/2.1/pdbformat.so 7f3922c27000-7f3922c35000 r-xp 00000000 08:01 920629 /usr/lib/openbabel/2.1/mpqcformat.so 7f3922c35000-7f3922e35000 ---p 0000e000 08:01 920629 /usr/lib/openbabel/2.1/mpqcformat.so 7f3922e35000-7f3922e36000 rw-p 0000e000 08:01 920629 /usr/lib/openbabel/2.1/mpqcformat.so 7f3922e36000-7f3922e44000 r-xp 00000000 08:01 920620 /usr/lib/openbabel/2.1/hinformat.so 7f3922e44000-7f3923044000 ---p 0000e000 08:01 920620 /usr/lib/openbabel/2.1/hinformat.so 7f3923044000-7f3923045000 rw-p 0000e000 08:01 920620 /usr/lib/openbabel/2.1/hinformat.so 7f3923045000-7f3923052000 r-xp 00000000 08:01 920613 /usr/lib/openbabel/2.1/fhformat.so 7f3923052000-7f3923252000 ---p 0000d000 08:01 920613 /usr/lib/openbabel/2.1/fhformat.so 7f3923252000-7f3923253000 rw-p 0000d000 08:01 920613 /usr/lib/openbabel/2.1/fhformat.so 7f3923253000-7f3923262000 r-xp 00000000 08:01 920637 /usr/lib/openbabel/2.1/reportformat.so 7f3923262000-7f3923462000 ---p 0000f000 08:01 920637 /usr/lib/openbabel/2.1/reportformat.so 7f3923462000-7f3923463000 rw-p 0000f000 08:01 920637 /usr/lib/openbabel/2.1/reportformat.so 7f3923463000-7f3923471000 r-xp 00000000 08:01 920614 /usr/lib/openbabel/2.1/fingerprintformat.so 7f3923471000-7f3923671000 ---p 0000e000 08:01 920614 /usr/lib/openbabel/2.1/fingerprintformat.so 7f3923671000-7f3923672000 rw-p 0000e000 08:01 920614 /usr/lib/openbabel/2.1/fingerprintformat.so 7f3923672000-7f3923682000 r-xp 00000000 08:01 920624 /usr/lib/openbabel/2.1/mmodformat.so 7f3923682000-7f3923882000 ---p 00010000 08:01 920624 /usr/lib/openbabel/2.1/mmodformat.so 7f3923882000-7f3923883000 rw-p 00010000 08:01 920624 /usr/lib/openbabel/2.1/mmodformat.so 7f3923883000-7f392389c000 r-xp 00000000 08:01 920623 /usr/lib/openbabel/2.1/mdlformat.so 7f392389c000-7f3923a9c000 ---p 00019000 08:01 920623 /usr/lib/openbabel/2.1/mdlformat.so 7f3923a9c000-7f3923a9d000 rw-p 00019000 08:01 920623 /usr/lib/openbabel/2.1/mdlformat.so 7f3923a9d000-7f3923aab000 r-xp 00000000 08:01 920585 /usr/lib/openbabel/2.1/alchemyformat.so 7f3923aab000-7f3923cab000 ---p 0000e000 08:01 920585 /usr/lib/openbabel/2.1/alchemyformat.so 7f3923cab000-7f3923cac000 rw-p 0000e000 08:01 920585 /usr/lib/openbabel/2.1/alchemyformat.so 7f3923cac000-7f3923cba000 r-xp 00000000 08:01 920626 /usr/lib/openbabel/2.1/molreportformat.so 7f3923cba000-7f3923eb9000 ---p 0000e000 08:01 920626 /usr/lib/openbabel/2.1/molreportformat.so 7f3923eb9000-7f3923eba000 rw-p 0000d000 08:01 920626 /usr/lib/openbabel/2.1/molreportformat.so 7f3923eba000-7f3923ebf000 r-xp 00000000 08:01 920638 /usr/lib/openbabel/2.1/rxnformat.so 7f3923ebf000-7f39240be000 ---p 00005000 08:01 920638 /usr/lib/openbabel/2.1/rxnformat.so 7f39240be000-7f39240bf000 rw-p 00004000 08:01 920638 /usr/lib/openbabel/2.1/rxnformat.so 7f39240bf000-7f39240cf000 r-xp 00000000 08:01 920591 /usr/lib/openbabel/2.1/cacaoformat.so 7f39240cf000-7f39242ce000 ---p 00010000 08:01 920591 /usr/lib/openbabel/2.1/cacaoformat.so 7f39242ce000-7f39242cf000 rw-p 0000f000 08:01 920591 /usr/lib/openbabel/2.1/cacaoformat.so 7f39242cf000-7f39242df000 r-xp 00000000 08:01 920617 /usr/lib/openbabel/2.1/gaussformat.so 7f39242df000-7f39244df000 ---p 00010000 08:01 920617 /usr/lib/openbabel/2.1/gaussformat.so 7f39244df000-7f39244e0000 rw-p 00010000 08:01 920617 /usr/lib/openbabel/2.1/gaussformat.so 7f39244e0000-7f39244ef000 r-xp 00000000 08:01 920636 /usr/lib/openbabel/2.1/qchemformat.so 7f39244ef000-7f39246ef000 ---p 0000f000 08:01 920636 /usr/lib/openbabel/2.1/qchemformat.so 7f39246ef000-7f39246f0000 rw-p 0000f000 08:01 920636 /usr/lib/openbabel/2.1/qchemformat.so 7f39246f0000-7f3924702000 r-xp 00000000 08:01 920635 /usr/lib/openbabel/2.1/pubchem.so 7f3924702000-7f3924902000 ---p 00012000 08:01 920635 /usr/lib/openbabel/2.1/pubchem.so 7f3924902000-7f3924903000 rw-p 00012000 08:01 920635 /usr/lib/openbabel/2.1/pubchem.so 7f3924903000-7f3924913000 r-xp 00000000 08:01 920648 /usr/lib/openbabel/2.1/xmlformat.so 7f3924913000-7f3924b13000 ---p 00010000 08:01 920648 /usr/lib/openbabel/2.1/xmlformat.so 7f3924b13000-7f3924b14000 rw-p 00010000 08:01 920648 /usr/lib/openbabel/2.1/xmlformat.so 7f3924b14000-7f3924b24000 r-xp 00000000 08:01 920634 /usr/lib/openbabel/2.1/PQSformat.so 7f3924b24000-7f3924d24000 ---p 00010000 08:01 920634 /usr/lib/openbabel/2.1/PQSformat.so 7f3924d24000-7f3924d25000 rw-p 00010000 08:01 920634 /usr/lib/openbabel/2.1/PQSformat.so 7f3924d25000-7f3924d42000 r-xp 00000000 08:01 920640 /usr/lib/openbabel/2.1/smilesformat.so 7f3924d42000-7f3924f42000 ---p 0001d000 08:01 920640 /usr/lib/openbabel/2.1/smilesformat.so 7f3924f42000-7f3924f43000 rw-p 0001d000 08:01 920640 /usr/lib/openbabel/2.1/smilesformat.so 7f3924f43000-7f3924f51000 r-xp 00000000 08:01 920592 /usr/lib/openbabel/2.1/cacheformat.so 7f3924f51000-7f3925150000 ---p 0000e000 08:01 920592 /usr/lib/openbabel/2.1/cacheformat.so 7f3925150000-7f3925151000 rw-p 0000d000 08:01 920592 /usr/lib/openbabel/2.1/cacheformat.so 7f3925151000-7f392515f000 r-xp 00000000 08:01 920607 /usr/lib/openbabel/2.1/cssrformat.so 7f392515f000-7f392535e000 ---p 0000e000 08:01 920607 /usr/lib/openbabel/2.1/cssrformat.so 7f392535e000-7f392535f000 rw-p 0000d000 08:01 920607 /usr/lib/openbabel/2.1/cssrformat.so 7f392535f000-7f392536d000 r-xp 00000000 08:01 920651 /usr/lib/openbabel/2.1/zindoformat.so 7f392536d000-7f392556c000 ---p 0000e000 08:01 920651 /usr/lib/openbabel/2.1/zindoformat.so 7f392556c000-7f392556d000 rw-p 0000d000 08:01 920651 /usr/lib/openbabel/2.1/zindoformat.so 7f392556d000-7f392557b000 r-xp 00000000 08:01 920600 /usr/lib/openbabel/2.1/chemtoolformat.so 7f392557b000-7f392577a000 ---p 0000e000 08:01 920600 /usr/lib/openbabel/2.1/chemtoolformat.so 7f392577a000-7f392577b000 rw-p 0000d000 08:01 920600 /usr/lib/openbabel/2.1/chemtoolformat.so 7f392577b000-7f3925789000 r-xp 00000000 08:01 920646 /usr/lib/openbabel/2.1/viewmolformat.so 7f3925789000-7f3925988000 ---p 0000e000 08:01 920646 /usr/lib/openbabel/2.1/viewmolformat.so 7f3925988000-7f3925989000 rw-p 0000d000 08:01 920646 /usr/lib/openbabel/2.1/viewmolformat.so 7f3925989000-7f3925997000 r-xp 00000000 08:01 920599 /usr/lib/openbabel/2.1/chemdrawctformat.so 7f3925997000-7f3925b96000 ---p 0000e000 08:01 920599 /usr/lib/openbabel/2.1/chemdrawctformat.so 7f3925b96000-7f3925b97000 rw-p 0000d000 08:01 920599 /usr/lib/openbabel/2.1/chemdrawctformat.so 7f3925b97000-7f3925ba5000 r-xp 00000000 08:01 920645 /usr/lib/openbabel/2.1/unichemformat.so 7f3925ba5000-7f3925da4000 ---p 0000e000 08:01 920645 /usr/lib/openbabel/2.1/unichemformat.so 7f3925da4000-7f3925da5000 rw-p 0000d000 08:01 920645 /usr/lib/openbabel/2.1/unichemformat.so 7f3925da5000-7f3925db3000 r-xp 00000000 08:01 920609 /usr/lib/openbabel/2.1/fastaformat.so 7f3925db3000-7f3925fb3000 ---p 0000e000 08:01 920609 /usr/lib/openbabel/2.1/fastaformat.so 7f3925fb3000-7f3925fb4000 rw-p 0000e000 08:01 920609 /usr/lib/openbabel/2.1/fastaformat.so 7f3925fb4000-7f3925fc5000 r-xp 00000000 08:01 920625 /usr/lib/openbabel/2.1/mol2format.so 7f3925fc5000-7f39261c5000 ---p 00011000 08:01 920625 /usr/lib/openbabel/2.1/mol2format.so 7f39261c5000-7f39261c6000 rw-p 00011000 08:01 920625 /usr/lib/openbabel/2.1/mol2format.so 7f39261c6000-7f39261d3000 r-xp 00000000 08:01 920647 /usr/lib/openbabel/2.1/xedformat.so 7f39261d3000-7f39263d3000 ---p 0000d000 08:01 920647 /usr/lib/openbabel/2.1/xedformat.so 7f39263d3000-7f39263d4000 rw-p 0000d000 08:01 920647 /usr/lib/openbabel/2.1/xedformat.so 7f39263d4000-7f39263e7000 r-xp 00000000 08:01 920598 /usr/lib/openbabel/2.1/chemdrawcdxformat.so 7f39263e7000-7f39265e7000 ---p 00013000 08:01 920598 /usr/lib/openbabel/2.1/chemdrawcdxformat.so 7f39265e7000-7f39265e8000 rw-p 00013000 08:01 920598 /usr/lib/openbabel/2.1/chemdrawcdxformat.so 7f39265e8000-7f3926608000 r-xp 00000000 08:01 920601 /usr/lib/openbabel/2.1/cifformat.so 7f3926608000-7f3926808000 ---p 00020000 08:01 920601 /usr/lib/openbabel/2.1/cifformat.so 7f3926808000-7f3926809000 rw-p 00020000 08:01 920601 /usr/lib/openbabel/2.1/cifformat.so 7f3926809000-7f3926818000 r-xp 00000000 08:01 920649 /usr/lib/openbabel/2.1/xyzformat.so 7f3926818000-7f3926a18000 ---p 0000f000 08:01 920649 /usr/lib/openbabel/2.1/xyzformat.so 7f3926a18000-7f3926a19000 rw-p 0000f000 08:01 920649 /usr/lib/openbabel/2.1/xyzformat.so 7f3926a19000-7f3926a26000 r-xp 00000000 08:01 920642 /usr/lib/openbabel/2.1/tinkerformat.so 7f3926a26000-7f3926c26000 ---p 0000d000 08:01 920642 /usr/lib/openbabel/2.1/tinkerformat.so 7f3926c26000-7f3926c27000 rw-p 0000d000 08:01 920642 /usr/lib/openbabel/2.1/tinkerformat.so 7f3926c27000-7f3926c30000 r-xp 00000000 08:01 920610 /usr/lib/openbabel/2.1/fastsearchformat.so 7f3926c30000-7f3926e30000 ---p 00009000 08:01 920610 /usr/lib/openbabel/2.1/fastsearchformat.so 7f3926e30000-7f3926e31000 rw-p 00009000 08:01 920610 /usr/lib/openbabel/2.1/fastsearchformat.so 7f3926e31000-7f3926f6e000 r-xp 00000000 08:01 66586 /usr/lib/libxml2.so.2.6.31 7f3926f6e000-7f392716e000 ---p 0013d000 08:01 66586 /usr/lib/libxml2.so.2.6.31 7f392716e000-7f3927177000 rw-p 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/usr/lib/openbabel/2.1/turbomoleformat.so 7f39277bc000-7f39279bc000 ---p 0000e000 08:01 920644 /usr/lib/openbabel/2.1/turbomoleformat.so 7f39279bc000-7f39279bd000 rw-p 0000e000 08:01 920644 /usr/lib/openbabel/2.1/turbomoleformat.so 7f39279bd000-7f39279cb000 r-xp 00000000 08:01 920639 /usr/lib/openbabel/2.1/shelxformat.so 7f39279cb000-7f3927bca000 ---p 0000e000 08:01 920639 /usr/lib/openbabel/2.1/shelxformat.so 7f3927bca000-7f3927bcb000 rw-p 0000d000 08:01 920639 /usr/lib/openbabel/2.1/shelxformat.so 7f3927bcb000-7f3927bde000 r-xp 00000000 08:01 920616 /usr/lib/openbabel/2.1/gamessformat.so 7f3927bde000-7f3927dde000 ---p 00013000 08:01 920616 /usr/lib/openbabel/2.1/gamessformat.so 7f3927dde000-7f3927ddf000 rw-p 00013000 08:01 920616 /usr/lib/openbabel/2.1/gamessformat.so 7f3927ddf000-7f3927dee000 r-xp 00000000 08:01 920618 /usr/lib/openbabel/2.1/ghemicalformat.so 7f3927dee000-7f3927fed000 ---p 0000f000 08:01 920618 /usr/lib/openbabel/2.1/ghemicalformat.so 7f3927fed000-7f3927fee000 rw-p 0000e000 08:01 920618 /usr/lib/openbabel/2.1/ghemicalformat.so 7f3927fee000-7f3927ffe000 r-xp 00000000 08:01 920589 /usr/lib/openbabel/2.1/bgfformat.so 7f3927ffe000-7f39281fd000 ---p 00010000 08:01 920589 /usr/lib/openbabel/2.1/bgfformat.so 7f39281fd000-7f39281fe000 rw-p 0000f000 08:01 920589 /usr/lib/openbabel/2.1/bgfformat.so 7f39281fe000-7f392820c000 r-xp 00000000 08:01 920595 /usr/lib/openbabel/2.1/cccformat.so 7f392820c000-7f392840b000 ---p 0000e000 08:01 920595 /usr/lib/openbabel/2.1/cccformat.so 7f392840b000-7f392840c000 rw-p 0000d000 08:01 920595 /usr/lib/openbabel/2.1/cccformat.so 7f392840c000-7f3928564000 r-xp 00000000 08:01 163881 /lib/libc-2.7.so 7f3928564000-7f3928764000 ---p 00158000 08:01 163881 /lib/libc-2.7.so 7f3928764000-7f3928767000 r--p 00158000 08:01 163881 /lib/libc-2.7.so 7f3928767000-7f3928769000 rw-p 0015b000 08:01 163881 /lib/libc-2.7.so 7f3928769000-7f392876e000 rw-p 7f3928769000 00:00 0 7f392876e000-7f392877b000 r-xp 00000000 08:01 163943 /lib/libgcc_s.so.1 7f392877b000-7f392897b000 ---p 0000d000 08:01 163943 /lib/libgcc_s.so.1 7f392897b000-7f392897c000 rw-p 0000d000 08:01 163943 /lib/libgcc_s.so.1 7f392897c000-7f39289fc000 r-xp 00000000 08:01 163899 /lib/libm-2.7.so 7f39289fc000-7f3928bfb000 ---p 00080000 08:01 163899 /lib/libm-2.7.so 7f3928bfb000-7f3928bfd000 rw-p 0007f000 08:01 163899 /lib/libm-2.7.so 7f3928bfd000-7f3928cec000 r-xp 00000000 08:01 67377 /usr/lib/libstdc++.so.6.0.9 7f3928cec000-7f3928eec000 ---p 000ef000 08:01 67377 /usr/lib/libstdc++.so.6.0.9 7f3928eec000-7f3928ef2000 r--p 000ef000 08:01 67377 /usr/lib/libstdc++.so.6.0.9 7f3928ef2000-7f3928ef5000 rw-p 000f5000 08:01 67377 /usr/lib/libstdc++.so.6.0.9 7f3928ef5000-7f3928f08000 rw-p 7f3928ef5000 00:00 0 7f3928f08000-7f3928f1e000 r-xp 00000000 08:01 67919 /usr/lib/libz.so.1.2.3.3 7f3928f1e000-7f392911e000 ---p 00016000 08:01 67919 /usr/lib/libz.so.1.2.3.3 7f392911e000-7f392911f000 rw-p 00016000 08:01 67919 /usr/lib/libz.so.1.2.3.3 7f392911f000-7f3929121000 r-xp 00000000 08:01 163893 /lib/libdl-2.7.so 7f3929121000-7f3929321000 ---p 00002000 08:01 163893 /lib/libdl-2.7.so 7f3929321000-7f3929323000 rw-p 00002000 08:01 163893 /lib/libdl-2.7.so 7f3929323000-7f392943c000 r-xp 00000000 08:01 69821 /usr/lib/libopenbabel.so.2.1.1 7f392943c000-7f392963b000 ---p 00119000 08:01 69821 /usr/lib/libopenbabel.so.2.1.1 7f392963b000-7f3929640000 rw-p 00118000 08:01 69821 /usr/lib/libopenbabel.so.2.1.1 7f3929640000-7f3929651000 rw-p 7f3929640000 00:00 0 7f3929651000-7f392966e000 r-xp 00000000 08:01 163860 /lib/ld-2.7.so 7f392984b000-7f392984f000 rw-p 7f392984b000 00:00 0 7f392986b000-7f392986e000 rw-p 7f392986b000 00:00 0 7f392986e000-7f3929870000 rw-p 0001d000 08:01 163860 /lib/ld-2.7.so 7fff49d1b000-7fff49d30000 rw-p 7ffffffea000 00:00 0 [stack] 7fff49dfe000-7fff49e00000 r-xp 7fff49dfe000 00:00 0 [vdso] ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall] Abandon ---------------------------------------------------------------------- You can respond by 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