On 30 June 2010 16:44, Geoffrey Hutchison <[email protected]> wrote:
>> bliss. bliss is GPLv2 and available from
>> http://www.tcs.hut.fi/Software/bliss/. My code also has a dependency
>> on Eigen2.
>
> I'm not thrilled at the idea of adding additional dependencies. I know people 
> like Kabsch alignment, but we can also distribute a "contributed" program for 
> those who want it and are willing to install bliss separately.

Hmmm...well, the additional dependency could be circumvented if we had
an isomorphism tester (essentially, do these two sets of atoms map
onto each other?). This would not be as efficient as using bliss, but
it would work. I'll hold the code back (well, it's available on my
github mirror) then until we have one of these.

>> How about Eigen2? Should I just optionally compile?
>
> Eigen2 is already optionally detected if installed. Some of the charge models 
> use it (namely QEq and QTPIE).
>
> Hope that helps,
> -Geoff
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