File Format Support item #3079799, was opened at 2010-10-02 02:09
Message generated for change (Tracker Item Submitted) made by nobody
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Category: Input
Group: None
Status: Open
Priority: 5
Private: No
Submitted By: Nobody/Anonymous (nobody)
Assigned to: Nobody/Anonymous (nobody)
Summary: Convert .pdbqt to .pdb
Initial Comment:
To convert .pdbqt to .pdb, just the last two columns in the file need to be
deleted. Its apparently simple on a *NIX machine but not windows. Its easy to
automate I hope.
To convert from PDBQT format to PDB format, the simplest thing to do is to
remove the charge (Q) and atom type (T) columns; this can be achieved using a
simple UNIX command. Make sure you are in the same directory where you created
my_docking.pdbqt, and type:
cut -c-66 my_docking.pdbqt > my_docking.pdb
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