> For interest I tested Open Babel using Rich's substructure benchmark
> at 
> http://depth-first.com/articles/2009/01/22/mx-performance-comparison-3-substructure-search-in-mx-and-cdk/.
> My code is at https://gist.github.com/663914.

Would you try running the benchmark with Chris's implicit valence adjustments? 
(The one which changes the IMPVAL to not require hybridization SMARTS.)

I'm curious how much of a hit the hybridization assignment causes.

Thanks,
-Geoff
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