On 22/03/2011 19:57, Geoffrey Hutchison wrote:
1. The use of Eigen doesn't appear to be optional, although I'm happy to have 
it.
It is, in fact. If Eigen is not found, these features will not be compiled.

2. The CMake file uses an environment variable that isn't mentioned in either 
the OpenBabel or Eigen documentation - %EIGEN2_INCLUDE_DIR% - that should be 
set to the root of the Eigen source code tree.
What happens when you run CMake? Can you send us the output of running it? It 
should not find Eigen, and then turn off these features.

Thanks,
-Geoff

Hi,

I deleted the environment variable pointing to Eigen, deleted the windows-vc2008\build folder and re-ran default_build.bat. The output is attached as default_build_output.txt.

Then I opened the windows-vc2008\build\openbabel.sln file and selected Rebuild Solution from the Build menu in Visual Studio 2008. The output is attached as build_output.txt. Note the error on line 533.

Best wishes,
Alex

C:\SourceCode\OpenBabel\openbabel\windows-vc2008\build>cmake.exe 
-DCMAKE_INSTALL_PREFIX=..\install -G "Visual Studio 9 2008" 
-DLIBXML2_LIBRARIES="C:\SourceCode\OpenBabel\openbabel\windows-vc2008\build\..\libs\i386\libxml2.lib"
 -DMINIMAL_BUILD=OFF -DLIBXML2_INCLUDE_DIR=. 
-DZLIB_LIBRARY="C:\SourceCode\OpenBabel\openbabel\windows-vc2008\build\..\libs\i386\zlib1.lib"
 -DZLIB_INCLUDE_DIR=. 
-DINCHI_LIBRARY="C:\SourceCode\OpenBabel\openbabel\windows-vc2008\build\..\libs\i386\libinchi.lib"
 
-DXDR_LIBRARY="C:\SourceCode\OpenBabel\openbabel\windows-vc2008\build\..\libs\i386\xdr.lib"
 -DEIGEN2_INCLUDE_DIR="" -DRUN_SWIG=ON -DJAVA_BINDINGS=ON -DENABLE_TESTS=OFF 
-DBUILD_GUI=ON -DwxWidgets_ROOT_DIR="" -DwxWidgets_LIB_DIR="/lib/vc_lib" 
-DwxWidgets_CONFIGURATION=msw         ..\.. 
-- Check for working C compiler using: Visual Studio 9 2008
-- Check for working C compiler using: Visual Studio 9 2008 -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler using: Visual Studio 9 2008
-- Check for working CXX compiler using: Visual Studio 9 2008 -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Found LibXml2: 
C:/SourceCode/OpenBabel/openbabel/windows-vc2008/libs/i386/libxml2.lib 
-- Found ZLIB: C:/SourceCode/OpenBabel/openbabel/windows-vc2008/build 
-- Could NOT find wxWidgets (missing:  wxWidgets_FOUND) 
-- Looking for conio.h
-- Looking for conio.h - found
-- Looking for sys/time.h
-- Looking for sys/time.h - not found
-- Looking for time.h
-- Looking for time.h - found
-- Looking for strings.h
-- Looking for strings.h - not found
-- Looking for rpc/xdr.h
-- Looking for rpc/xdr.h - found
-- Looking for regex.h
-- Looking for regex.h - not found
-- Looking for C++ include sstream
-- Looking for C++ include sstream - found
-- Looking for rint
-- Looking for rint - not found.
-- Looking for snprintf
-- Looking for snprintf - not found.
-- Looking for sranddev
-- Looking for sranddev - not found.
-- Looking for strcasecmp
-- Looking for strcasecmp - not found.
-- Looking for strncasecmp
-- Looking for strncasecmp - not found.
-- Looking for dlopen in dl
-- Looking for dlopen in dl - not found
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of clock_t
-- Check size of clock_t - done
-- Could NOT find Eigen2 (missing:  EIGEN2_INCLUDE_DIR) 
-- Looking for getopt
-- Looking for getopt - not found
-- Could NOT find SWIG (missing:  SWIG_EXECUTABLE SWIG_DIR) 
-- Could NOT find SWIG (missing:  SWIG_EXECUTABLE SWIG_DIR) 
-- SWIG NOT found
-- Configuring done
-- Generating done
-- Build files have been written to: 
C:/SourceCode/OpenBabel/openbabel/windows-vc2008/build
1>------ Rebuild All started: Project: ZERO_CHECK, Configuration: Debug Win32 
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1>Deleting intermediate and output files for project 'ZERO_CHECK', 
configuration 'Debug|Win32'
1>Checking Build System
1>CMake does not need to re-run because 
C:/SourceCode/OpenBabel/openbabel/windows-vc2008/build/CMakeFiles/generate.stamp
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1>CMake does not need to re-run because 
C:/SourceCode/OpenBabel/openbabel/windows-vc2008/build/include/CMakeFiles/generate.stamp
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 is up-to-date.
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2>Microsoft (R) Windows (R) Resource Compiler Version 6.1.6723.1
2>Copyright (C) Microsoft Corporation.  All rights reserved.
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2>   Creating library 
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C:\SourceCode\OpenBabel\openbabel\windows-vc2008\build\src\Debug\openbabel-2.exp
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2>Microsoft (R) Windows (R) Resource Compiler Version 6.1.6723.1
2>Copyright (C) Microsoft Corporation.  All rights reserved.
2>Build log was saved at 
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2>openbabel - 0 error(s), 0 warning(s)
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3>Microsoft (R) Windows (R) Resource Compiler Version 6.1.6723.1
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5>Microsoft (R) Windows (R) Resource Compiler Version 6.1.6723.1
5>Copyright (C) Microsoft Corporation.  All rights reserved.
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11>Copyright (C) Microsoft Corporation.  All rights reserved.
12>Microsoft (R) Windows (R) Resource Compiler Version 6.1.6723.1
12>Copyright (C) Microsoft Corporation.  All rights reserved.
10>Build log was saved at 
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 is up-to-date.
20>Compiling...
20>xml.cpp
17>Microsoft (R) Windows (R) Resource Compiler Version 6.1.6723.1
17>Copyright (C) Microsoft Corporation.  All rights reserved.
17>Build log was saved at 
"file://c:\SourceCode\OpenBabel\openbabel\windows-vc2008\build\tools\obconformer.dir\Debug\BuildLog.htm"
17>obconformer - 0 error(s), 0 warning(s)
21>------ Rebuild All started: Project: formats_utility, Configuration: Debug 
Win32 ------
21>Deleting intermediate and output files for project 'formats_utility', 
configuration 'Debug|Win32'
21>Building Custom Rule 
C:/SourceCode/OpenBabel/openbabel/src/formats/CMakeLists.txt
21>CMake does not need to re-run because 
C:\SourceCode\OpenBabel\openbabel\windows-vc2008\build\src\formats\CMakeFiles\generate.stamp
 is up-to-date.
21>Compiling...
21>pngformat.cpp
19>Performing Pre-Link Event...
19>Compiling manifest to resources...
19>Microsoft (R) Windows (R) Resource Compiler Version 6.1.6723.1
19>Copyright (C) Microsoft Corporation.  All rights reserved.
19>Linking...
19>Embedding manifest...
19>Microsoft (R) Windows (R) Resource Compiler Version 6.1.6723.1
19>Copyright (C) Microsoft Corporation.  All rights reserved.
18>Performing Pre-Link Event...
19>Build log was saved at 
"file://c:\SourceCode\OpenBabel\openbabel\windows-vc2008\build\tools\obabel.dir\Debug\BuildLog.htm"
19>obabel - 0 error(s), 0 warning(s)
18>Compiling manifest to resources...
18>Microsoft (R) Windows (R) Resource Compiler Version 6.1.6723.1
18>Copyright (C) Microsoft Corporation.  All rights reserved.
18>Linking...
18>Embedding manifest...
22>------ Rebuild All started: Project: formats_misc, Configuration: Debug 
Win32 ------
22>Deleting intermediate and output files for project 'formats_misc', 
configuration 'Debug|Win32'
18>Microsoft (R) Windows (R) Resource Compiler Version 6.1.6723.1
18>Copyright (C) Microsoft Corporation.  All rights reserved.
22>Building Custom Rule 
C:/SourceCode/OpenBabel/openbabel/src/formats/CMakeLists.txt
18>Build log was saved at 
"file://c:\SourceCode\OpenBabel\openbabel\windows-vc2008\build\tools\obchiral.dir\Debug\BuildLog.htm"
18>obchiral - 0 error(s), 0 warning(s)
21>titleformat.cpp
22>CMake does not need to re-run because 
C:\SourceCode\OpenBabel\openbabel\windows-vc2008\build\src\formats\CMakeFiles\generate.stamp
 is up-to-date.
20>cmlreactformat.cpp
22>Compiling...
22>xtcformat.cpp
23>------ Rebuild All started: Project: formats_compchem, Configuration: Debug 
Win32 ------
23>Deleting intermediate and output files for project 'formats_compchem', 
configuration 'Debug|Win32'
23>Building Custom Rule 
C:/SourceCode/OpenBabel/openbabel/src/formats/CMakeLists.txt
23>CMake does not need to re-run because 
C:\SourceCode\OpenBabel\openbabel\windows-vc2008\build\src\formats\CMakeFiles\generate.stamp
 is up-to-date.
23>Compiling...
23>gamessukformat.cpp
21>textformat.cpp
20>xmlformat.cpp
21>svgformat.cpp
22>rsmiformat.cpp
23>zindoformat.cpp
20>pubchem.cpp
21>reportformat.cpp
22>chemkinformat.cpp
23>vaspformat.cpp
20>cmlformat.cpp
21>povrayformat.cpp
22>chemdrawcdx.cpp
23>turbomoleformat.cpp
20>cdxmlformat.cpp
21>nulformat.cpp
23>qchemformat.cpp
22>rxnformat.cpp
21>molreport.cpp
20>Generating Code...
23>pwscfformat.cpp
22>yasaraformat.cpp
21>MNAformat.cpp
20>Compiling manifest to resources...
20>Microsoft (R) Windows (R) Resource Compiler Version 6.1.6723.1
20>Copyright (C) Microsoft Corporation.  All rights reserved.
20>Linking...
23>nwchemformat.cpp
20>Embedding manifest...
22>xyzformat.cpp
20>Microsoft (R) Windows (R) Resource Compiler Version 6.1.6723.1
20>Copyright (C) Microsoft Corporation.  All rights reserved.
20>Build log was saved at 
"file://c:\SourceCode\OpenBabel\openbabel\windows-vc2008\build\src\formats\formats_xml.dir\Debug\BuildLog.htm"
20>formats_xml - 0 error(s), 0 warning(s)
24>------ Rebuild All started: Project: formats_common, Configuration: Debug 
Win32 ------
24>Deleting intermediate and output files for project 'formats_common', 
configuration 'Debug|Win32'
24>Building Custom Rule 
C:/SourceCode/OpenBabel/openbabel/src/formats/CMakeLists.txt
24>CMake does not need to re-run because 
C:\SourceCode\OpenBabel\openbabel\windows-vc2008\build\src\formats\CMakeFiles\generate.stamp
 is up-to-date.
21>copyformat.cpp
24>Compiling...
24>unique.cpp
23>mopacformat.cpp
21>Generating Code...
22>xedformat.cpp
21>Compiling manifest to resources...
21>Microsoft (R) Windows (R) Resource Compiler Version 6.1.6723.1
21>Copyright (C) Microsoft Corporation.  All rights reserved.
21>Linking...
21>Embedding manifest...
21>Microsoft (R) Windows (R) Resource Compiler Version 6.1.6723.1
21>Copyright (C) Microsoft Corporation.  All rights reserved.
23>molproformat.cpp
21>Build log was saved at 
"file://c:\SourceCode\OpenBabel\openbabel\windows-vc2008\build\src\formats\formats_utility.dir\Debug\BuildLog.htm"
21>formats_utility - 0 error(s), 0 warning(s)
22>viewmolformat.cpp
25>------ Rebuild All started: Project: babel, Configuration: Debug Win32 ------
25>Deleting intermediate and output files for project 'babel', configuration 
'Debug|Win32'
25>Building Custom Rule C:/SourceCode/OpenBabel/openbabel/tools/CMakeLists.txt
25>CMake does not need to re-run because 
C:\SourceCode\OpenBabel\openbabel\windows-vc2008\build\tools\CMakeFiles\generate.stamp
 is up-to-date.
25>Compiling...
25>babel.cpp
24>getinchi.cpp
24>inchiformat.cpp
23>jaguarformat.cpp
22>unichemformat.cpp
25>Performing Pre-Link Event...
25>Compiling manifest to resources...
25>Microsoft (R) Windows (R) Resource Compiler Version 6.1.6723.1
25>Copyright (C) Microsoft Corporation.  All rights reserved.
25>Linking...
23>hinformat.cpp
24>pdbformat.cpp
22>tinkerformat.cpp
25>Embedding manifest...
23>gulpformat.cpp
24>mol2format.cpp
25>Microsoft (R) Windows (R) Resource Compiler Version 6.1.6723.1
25>Copyright (C) Microsoft Corporation.  All rights reserved.
25>Build log was saved at 
"file://c:\SourceCode\OpenBabel\openbabel\windows-vc2008\build\tools\babel.dir\Debug\BuildLog.htm"
25>babel - 0 error(s), 0 warning(s)
26>------ Rebuild All started: Project: plugin_ops, Configuration: Debug Win32 
------
26>Deleting intermediate and output files for project 'plugin_ops', 
configuration 'Debug|Win32'
26>Building Custom Rule C:/SourceCode/OpenBabel/openbabel/src/CMakeLists.txt
26>CMake does not need to re-run because 
C:\SourceCode\OpenBabel\openbabel\windows-vc2008\build\src\CMakeFiles\generate.stamp
 is up-to-date.
22>..\..\..\..\src\formats\tinkerformat.cpp(101) : warning C4101: 'atomicNum' : 
unreferenced local variable
22>..\..\..\..\src\formats\tinkerformat.cpp(220) : warning C4101: 'c' : 
unreferenced local variable
26>Compiling...
26>xout.cpp
22>thermoformat.cpp
23>gausszmatformat.cpp
24>mdlformat.cpp
26>opisomorph.cpp
22>shelxformat.cpp
23>gausscubeformat.cpp
26>sort.cpp
24>smilesformat.cpp
22>pqrformat.cpp
23>gaussformat.cpp
26>readconformers.cpp
24>Generating Code...
23>gamessformat.cpp
22>pdbqtformat.cpp
26>partialcharges.cpp
23>fhiaimsformat.cpp
24>Compiling manifest to resources...
24>Microsoft (R) Windows (R) Resource Compiler Version 6.1.6723.1
24>Copyright (C) Microsoft Corporation.  All rights reserved.
24>Linking...
22>pcmodelformat.cpp
26>optransform.cpp
24>Embedding manifest...
24>Microsoft (R) Windows (R) Resource Compiler Version 6.1.6723.1
24>Copyright (C) Microsoft Corporation.  All rights reserved.
24>Build log was saved at 
"file://c:\SourceCode\OpenBabel\openbabel\windows-vc2008\build\src\formats\formats_common.dir\Debug\BuildLog.htm"
24>formats_common - 0 error(s), 0 warning(s)
23>fchkformat.cpp
22>outformat.cpp
26>opalign.cpp
23>dmolformat.cpp
22>opendxformat.cpp
26>C:\SourceCode\OpenBabel\openbabel\include\openbabel/math/align.h(26) : fatal 
error C1083: Cannot open include file: 'Eigen/Core': No such file or directory
26>loader.cpp
26>largest.cpp
23>castepformat.cpp
22>msmsformat.cpp
26>gen3d.cpp
22>msiformat.cpp
23>Generating Code...
26>forcefield.cpp
22>Generating Code...
22>c:\sourcecode\openbabel\openbabel\src\formats\tinkerformat.cpp(486) : 
warning C4715: 'OpenBabel::SetMM3Type' : not all control paths return a value
26>fillUC.cpp
23>Compiling...
23>adfformat.cpp
22>c:\sourcecode\openbabel\openbabel\src\formats\xtcformat.cpp(669) : warning 
C4700: uninitialized local variable 'oldsize' used
22>c:\sourcecode\openbabel\openbabel\src\formats\xtcformat.cpp(676) : warning 
C4700: uninitialized local variable 'buf' used
22>Compiling...
22>mpqcformat.cpp
26>gen2D.cpp
23>Generating Code...
23>Compiling manifest to resources...
23>Microsoft (R) Windows (R) Resource Compiler Version 6.1.6723.1
23>Copyright (C) Microsoft Corporation.  All rights reserved.
23>Linking...
26>canonical.cpp
22>mpdformat.cpp
23>Embedding manifest...
23>Microsoft (R) Windows (R) Resource Compiler Version 6.1.6723.1
23>Copyright (C) Microsoft Corporation.  All rights reserved.
23>Build log was saved at 
"file://c:\SourceCode\OpenBabel\openbabel\windows-vc2008\build\src\formats\formats_compchem.dir\Debug\BuildLog.htm"
23>formats_compchem - 0 error(s), 0 warning(s)
26>addpolarh.cpp
22>moldenformat.cpp
26>addinindex.cpp
22>mmodformat.cpp
26>Generating Code...
22>mmcifformat.cpp
26>Build log was saved at 
"file://c:\SourceCode\OpenBabel\openbabel\windows-vc2008\build\src\plugin_ops.dir\Debug\BuildLog.htm"
26>plugin_ops - 1 error(s), 0 warning(s)
22>gromos96format.cpp
22>ghemicalformat.cpp
22>freefracformat.cpp
22>fingerprintformat.cpp
22>fhformat.cpp
22>featformat.cpp
22>fastaformat.cpp
22>fastsearchformat.cpp
22>dlpolyformat.cpp
22>cssrformat.cpp
22>crkformat.cpp
22>cifformat.cpp
22>chemtoolformat.cpp
22>chemdrawct.cpp
22>chem3dformat.cpp
22>Generating Code...
22>Compiling...
22>cccformat.cpp
22>carformat.cpp
22>cacheformat.cpp
22>cacaoformat.cpp
22>boxformat.cpp
22>bgfformat.cpp
22>balstformat.cpp
22>amberformat.cpp
22>acrformat.cpp
22>alchemyformat.cpp
22>MCDLformat.cpp
22>PQSformat.cpp
22>CSRformat.cpp
22>APIInterface.cpp
22>Generating Code...
22>Compiling manifest to resources...
22>Microsoft (R) Windows (R) Resource Compiler Version 6.1.6723.1
22>Copyright (C) Microsoft Corporation.  All rights reserved.
22>Linking...
22>Embedding manifest...
22>Microsoft (R) Windows (R) Resource Compiler Version 6.1.6723.1
22>Copyright (C) Microsoft Corporation.  All rights reserved.
22>Build log was saved at 
"file://c:\SourceCode\OpenBabel\openbabel\windows-vc2008\build\src\formats\formats_misc.dir\Debug\BuildLog.htm"
22>formats_misc - 0 error(s), 5 warning(s)
27>------ Rebuild All started: Project: ALL_BUILD, Configuration: Debug Win32 
------
27>Deleting intermediate and output files for project 'ALL_BUILD', 
configuration 'Debug|Win32'
27>Building Custom Rule C:/SourceCode/OpenBabel/openbabel/CMakeLists.txt
27>CMake does not need to re-run because 
C:\SourceCode\OpenBabel\openbabel\windows-vc2008\build\CMakeFiles\generate.stamp
 is up-to-date.
27>Build log was saved at 
"file://c:\SourceCode\OpenBabel\openbabel\windows-vc2008\build\ALL_BUILD.dir\Debug\BuildLog.htm"
27>ALL_BUILD - 0 error(s), 0 warning(s)
28>------ Skipped Rebuild All: Project: INSTALL, Configuration: Debug Win32 
------
28>Project not selected to build for this solution configuration 
========== Rebuild All: 26 succeeded, 1 failed, 1 skipped ==========
------------------------------------------------------------------------------
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