Patches item #3399369, was opened at 2011-08-28 01:02 Message generated for change (Tracker Item Submitted) made by th9 You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=428742&aid=3399369&group_id=40728
Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: My Th (th9) Assigned to: Nobody/Anonymous (nobody) Summary: Fix tests with Python 3 Initial Comment: - Fix TabError: inconsistent use of tabs and spaces in indentation - Fix string exception (SyntaxError: invalid syntax) - Fix encoding/decoding of strings for buffered pipes in Popen (TypeError: Type str doesn't support the buffer API) Some PyBel tests are outdated and one pytest_sym test fails: 55: Test command: /usr/bin/cmake "-P" "/home/reinis/Hack/OpenBabel/build_trunk/test/pytest_sym.cmake" 55: Test timeout computed to be: 1500 55: NOTFOUND 55: .....F.................. 55: ====================================================================== 55: FAIL: testXYZtoSMILESand3DMDL (__main__.TestConversions) 55: Test conversion from XYZ to SMILES and 3D MDL 55: ---------------------------------------------------------------------- 55: Traceback (most recent call last): 55: File "/home/reinis/Hack/OpenBabel/openbabel/openbabel/trunk/test/testsym.py", line 248, in testXYZtoSMILESand3DMDL 55: self.assertEqual(canoutput.rstrip(), can) 55: AssertionError: 'I[CH][C]1CN1' != 'I/C=C/1\\CN1' 55: 55: ---------------------------------------------------------------------- 55: Ran 24 tests in 6.398s 55: 55: FAILED (failures=1) 55: 2/8 Test #55: pytest_sym .......................***Failed Error regular expression found in output. Regex=[FAIL] 6.45 sec 60: Test command: /usr/bin/cmake "-P" "/home/reinis/Hack/OpenBabel/build_trunk/test/pybindtest__pybel.cmake" 60: Test timeout computed to be: 1500 60: /home/reinis/Hack/OpenBabel/build_trunk/scripts/pybuild:/home/reinis/Hack/OpenBabel/build_trunk/lib 60: ........................============================== 60: *** Open Babel Warning in WriteMolecule 60: No 2D or 3D coordinates exist. Any stereochemical information will be lost. To generate 2D or 3D coordinates use --gen2D or --gen3d. 60: ..============================== 60: *** Open Babel Error in ReadMolecule 60: &*)(%)($) contained a character '&' which is invalid in SMILES 60: ...============================== 60: *** Open Babel Error in SMARTSError 60: SMARTS Error: 60: [#NOEL][#NOEL] 60: ^ 60: 60: ...============================== 60: *** Open Babel Error in ExtractUnitCell 60: CIF ERROR: missing a,b or c value - cannot interpret structure ! 60: ============================== 60: *** Open Babel Warning in ExtractSpacegroup 60: CIF ERROR: missing spacegroup description: defaulting to P1... 60: . 60: ---------------------------------------------------------------------- 60: Ran 33 tests in 0.593s 60: 60: OK 60: 7/8 Test #60: pybindtest__pybel ................***Failed Error regular expression found in output. Regex=[ERROR] 0.73 sec ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=428742&aid=3399369&group_id=40728 ------------------------------------------------------------------------------ EMC VNX: the world's simplest storage, starting under $10K The only unified storage solution that offers unified management Up to 160% more powerful than alternatives and 25% more efficient. Guaranteed. http://p.sf.net/sfu/emc-vnx-dev2dev _______________________________________________ OpenBabel-Devel mailing list OpenBabel-Devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-devel
