I also have problems with building on MinGW and on OSX. MinGW - I'm using Windows XP with gcc 4.4.0. I was using the following instructions to compile OB (used successfully for OB 2.3.0 in the past): http://sourceforge.net/apps/mediawiki/osra/index.php?title=Compilation_on_Windows
I'm getting the following error when running make: [ 78%] Built target openbabel Linking CXX executable ../bin/babel.exe ../src/libopenbabel.a(plugin.obj):c:/msys/1.0/home/igor/openbabel-2.3.1/src/plug in.cpp:336: undefined reference to `OpenBabel::theQEqCharges' ../src/libopenbabel.a(plugin.obj):c:/msys/1.0/home/igor/openbabel-2.3.1/src/plug in.cpp:337: undefined reference to `OpenBabel::theQTPIECharges' ../src/libopenbabel.a(genbankformat.obj):c:/msys/1.0/home/igor/openbabel-2.3.1/s rc/formats/genbankformat.cpp:137: undefined reference to `OpenBabel::ReadFASTASe quence(OpenBabel::OBMol*, int, std::istream*, bool, bool)' collect2: ld returned 1 exit status make[2]: *** [bin/babel.exe] Error 1 make[1]: *** [tools/CMakeFiles/babel.dir/all] Error 2 make: *** [all] Error 2 OSX - 10.5.8 g++ 4.0.1 http://sourceforge.net/apps/mediawiki/osra/index.php?title=Compilation_on_MacOS [ 78%] Built target openbabel Linking CXX executable ../bin/babel Undefined symbols: "OpenBabel::theQTPIECharges", referenced from: __ZN9OpenBabel15theQTPIEChargesE$non_lazy_ptr in libopenbabel.a(plugin.o) "OpenBabel::theQEqCharges", referenced from: __ZN9OpenBabel13theQEqChargesE$non_lazy_ptr in libopenbabel.a(plugin.o) "OpenBabel::ReadFASTASequence(OpenBabel::OBMol*, int, std::basic_istream<char, std::char_traits<char> >*, bool, bool)", referenced from: OpenBabel::GenBankFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBCo nversion*)in libopenbabel.a(genbankformat.o) ld: symbol(s) not found collect2: ld returned 1 exit status make[2]: *** [bin/babel] Error 1 make[1]: *** [tools/CMakeFiles/babel.dir/all] Error 2 make: *** [all] Error 2 Looks like the same problem, but the message is somewhat different. I was able to compile 2.3.1 on Linux without any problems, though I didn't use static linking there. Igor On Thu, 2011-10-20 at 07:59 -0400, Ernst-Georg Schmid wrote: > Hello again, > > I'm trying to build OB 2.3.1 with MinGW using the following CMake command: > > $ cmake .. -G "MSYS Makefiles" -DBUILD_SHARED=OFF > -DCMAKE_INSTALL_PREFIX="c:/tigress" -DZLIB_INCLUDE_DIR=/c/mingw/include > -DZLIB_LIBRARY=/c/mingw/lib/libz.a - > DLIBXML2_INCLUDE_DIR=/c/mingw/include > -DLIBXML2_LIBRARIES=/c/mingw/lib/libxml2.a > -DEIGEN2_INCLUDE_DIR=/c/mingw/opt/eigen > > with gcc 4.5.0 > > $ gcc -v > Using built-in specs. > COLLECT_GCC=C:\MinGW\bin\gcc.exe > COLLECT_LTO_WRAPPER=c:/mingw/bin/../libexec/gcc/mingw32/4.5.0/lto-wrapper.exe > Target: mingw32 > Configured with: ../gcc-4.5.0/configure > --enable-languages=c,c++,ada,fortran,obj > c,obj-c++ --disable-sjlj-exceptions --with-dwarf2 --enable-shared > --enable-libgo > mp --disable-win32-registry --enable-libstdcxx-debug > --enable-version-specific-r > untime-libs --disable-werror --build=mingw32 --prefix=/mingw > Thread model: win32 > gcc version 4.5.0 (GCC) > > followed by 'make -j4'. > > This works as expected without obvious errors, delivering a libopenbabel.a > and statically linked binaries. > > BUT: > > 'make tests' fails at test 10 and 11 > > Start 10: isomorphism_Test > 10/50 Test #10: isomorphism_Test .................***Failed Error regular > expression found in output. Regex=[FAIL] 1.42 sec > Start 11: rotor_Test > 11/50 Test #11: rotor_Test .......................***Failed Error regular > expression found in output. Regex=[FAIL] 1.09 sec > > AND > > The resulting babel.exe is missing support for cml and inchi. The are not in > the 'babel -L Formats' list and if I try to use them anyway I get: > > babel: cannot write output format! > > Any ideas? > > Best regards, > > Ernst-Georg > > > ------------------------------------------------------------------------------ > The demand for IT networking professionals continues to grow, and the > demand for specialized networking skills is growing even more rapidly. > Take a complimentary Learning@Ciosco Self-Assessment and learn > about Cisco certifications, training, and career opportunities. > http://p.sf.net/sfu/cisco-dev2dev > _______________________________________________ > OpenBabel-Devel mailing list > OpenBabel-Devel@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/openbabel-devel ------------------------------------------------------------------------------ The demand for IT networking professionals continues to grow, and the demand for specialized networking skills is growing even more rapidly. Take a complimentary Learning@Cisco Self-Assessment and learn about Cisco certifications, training, and career opportunities. http://p.sf.net/sfu/cisco-dev2dev _______________________________________________ OpenBabel-Devel mailing list OpenBabel-Devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-devel
