Bugs item #3536321, was opened at 2012-06-19 07:44
Message generated for change (Tracker Item Submitted) made by baoilleach
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Category: Library Functions
Group: 2.3.x
Status: Open
Resolution: None
Priority: 5
Private: No
Submitted By: Noel O'Boyle (baoilleach)
Assigned to: Nobody/Anonymous (nobody)
Summary: Xn or vn SMARTS match for radical fails

Initial Comment:
X3 means 3 connections in total (explicit and implicit)

>obabel -:CC(=O)[NH2] -s [#6][NX3H2] -osmi
CC(=O)N
....correct!

But for the corresponding radical....

>obabel -:CC(=O)[NH]  -s [#6][NX2H1] -osmi
0 molecules
...incorrect...it should match

>obabel -:CC(=O)[NH]  -s [#6][NX3H1] -osmi
CC(=O)[NH]
...incorrect...it shouldn't match

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